Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 2.2e-195 685.6 390 100.0
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 8.6e-128 461.1 395 65.3
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 5.2e-125 451.8 394 65.2
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 4.2e-122 442.2 398 67.3
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.3e-120 437.2 402 64.7
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 4.3e-119 432.2 400 63.5
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 8.4e-115 417.9 409 56.5
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.4e-114 417.2 399 64.7
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 2.4e-114 416.4 404 58.2
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 4.2e-114 415.6 407 56.3
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 7.1e-114 414.8 395 63.3
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 9.3e-114 414.5 399 58.6
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.2e-113 414.1 390 65.6
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 2.7e-113 412.9 408 55.9
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 2.7e-113 412.9 401 63.3
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 6.0e-113 411.8 400 64.5
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 6.0e-113 411.8 398 58.5
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.0e-112 411.0 401 62.8
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 1.3e-112 410.6 392 63.8
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.7e-112 410.2 395 60.8
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 5.1e-112 408.7 407 61.7
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 6.6e-112 408.3 398 59.0
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 6.6e-112 408.3 394 65.0
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 1.1e-111 407.5 407 60.7
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 1.5e-111 407.1 402 61.9
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 1.9e-111 406.8 389 59.9
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 3.3e-111 406.0 398 58.5
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 5.6e-111 405.2 390 64.1
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 9.6e-111 404.4 392 60.5
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 1.3e-110 404.1 397 62.0
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 1.3e-110 404.1 397 59.2
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.3e-110 404.1 400 60.2
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 1.6e-110 403.7 405 60.0
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 4.8e-110 402.1 400 56.8
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 4.8e-110 402.1 407 55.5
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 6.2e-110 401.7 402 56.5
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 8.1e-110 401.4 405 62.0
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 1.1e-109 401.0 406 58.9
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.1e-109 401.0 396 59.1
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 1.8e-109 400.2 406 56.2
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 1.8e-109 400.2 390 63.8
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 3.1e-109 399.4 400 61.0
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 4.0e-109 399.1 406 55.9
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 4.0e-109 399.1 397 59.2
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 5.3e-109 398.7 394 58.6
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 5.3e-109 398.7 400 62.5
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 5.3e-109 398.7 415 56.9
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 9.0e-109 397.9 397 61.0
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 9.0e-109 397.9 398 58.0
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.0e-109 397.9 398 58.0
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.0e-108 396.7 397 63.5
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 2.0e-108 396.7 398 60.8
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 2.0e-108 396.7 399 61.9
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 2.0e-108 396.7 406 58.9
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.6e-108 396.4 401 60.8
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 2.6e-108 396.4 402 62.4
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.4e-108 396.0 402 61.4
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 4.5e-108 395.6 406 55.9
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 4.5e-108 395.6 392 57.1
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.5e-108 395.6 398 57.8
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 7.6e-108 394.8 388 63.1
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 7.6e-108 394.8 399 62.2
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 7.6e-108 394.8 404 61.9
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 9.9e-108 394.4 421 56.3
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 1.7e-107 393.7 388 57.7
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 4.9e-107 392.1 405 62.5
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 8.4e-107 391.3 389 62.7
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 8.4e-107 391.3 406 62.1
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 1.1e-106 391.0 400 61.0
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 2.4e-106 389.8 402 59.5
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 4.2e-106 389.0 402 58.0
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 5.5e-106 388.7 406 60.8
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 7.1e-106 388.3 415 58.6
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 9.3e-106 387.9 389 56.8
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.2e-105 387.5 405 54.8
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 1.2e-105 387.5 389 56.3
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 7.9e-105 384.8 388 55.7
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 1.0e-104 384.4 406 59.4
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.8e-104 383.6 398 55.8
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 3.0e-104 382.9 392 58.9
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 3.0e-104 382.9 391 56.0
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 6.7e-104 381.7 398 60.6
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 6.7e-104 381.7 388 56.2
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 8.7e-104 381.3 310 65.5
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 8.7e-104 381.3 321 64.2
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 1.1e-103 380.9 397 61.5
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.9e-103 380.2 398 61.3
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.3e-103 379.0 303 66.3
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 1.3e-102 377.5 388 55.7
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 2.1e-102 376.7 388 54.9
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 6.2e-102 375.2 298 66.8
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 1.1e-101 374.4 385 57.7
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.8e-101 373.6 304 66.1
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 2.4e-101 373.2 420 51.7
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 3.8e-99 365.9 324 61.1
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 8.4e-99 364.8 419 51.3
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 2.5e-98 363.2 307 62.5
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 2.5e-98 363.2 376 58.2
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 4.2e-98 362.5 307 62.2
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 5.5e-98 362.1 324 60.5
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 1.8e-96 357.1 393 56.7
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.1e-93 345.9 388 52.6
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.1e-89 333.6 369 52.3
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 6.1e-89 332.0 395 50.4
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.7e-88 328.6 365 51.8
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.3e-85 318.9 383 49.6
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.2e-84 317.8 442 49.5
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.9e-80 302.8 382 47.6
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 9.7e-79 298.1 211 72.5
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 8.2e-78 295.0 240 65.0
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 9.4e-74 281.6 266 57.5
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 8.2e-70 268.5 356 49.2
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 6.5e-67 258.8 426 42.7
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 1.1e-63 248.1 138 85.5
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 9.7e-63 245.0 141 82.3
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 9.1e-61 238.4 337 44.5
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 1.3e-59 234.6 328 45.4
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 8.0e-57 225.3 241 53.1
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.8e-54 216.9 164 64.0
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.4e-53 214.5 122 84.4
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 2.2e-51 207.2 117 83.8
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 1.8e-48 197.6 282 55.7
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 5.0e-43 179.5 97 90.7
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.9e-42 177.6 278 42.4
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 1.4e-40 171.4 165 53.9
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 6.8e-40 169.1 156 51.9
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 2.0e-39 167.5 104 75.0
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 1.6e-36 157.9 159 52.2
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 5.0e-35 152.9 270 43.3
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 3.3e-34 150.2 400 35.8
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 2.8e-25 120.6 251 37.5
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 6.8e-24 115.9 99 60.6
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 6.4e-22 109.4 80 67.5
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.2e-17 95.1 62 71.0
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.2e-17 95.1 62 71.0
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.6e-17 93.6 62 69.4
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 4.7e-17 93.2 153 53.6
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 4.7e-17 93.2 62 69.4
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 4.0e-16 90.1 108 48.1
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 1.1e-13 82.0 68 57.4
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 4.1e-13 80.1 68 57.4
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 9.2e-13 79.0 66 57.6
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 1.2e-12 78.6 73 56.2
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 7.8e-12 75.9 165 36.4
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 1.1e-10 72.0 141 34.8
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.2e-07 62.0 152 32.2


User provided reference genes

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