Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 7.8e-191 670.2 326 100.0
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.6e-122 443.4 327 66.1
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 1.2e-109 400.6 306 64.4
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 1.5e-109 400.2 272 68.4
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 4.6e-106 388.7 305 63.3
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 4.6e-106 388.7 315 62.2
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.0e-105 387.5 305 63.0
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 5.6e-104 381.7 307 60.6
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 7.3e-104 381.3 307 60.3
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.6e-103 380.2 276 66.7
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 6.2e-103 378.3 304 63.5
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 6.2e-103 378.3 304 62.2
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 8.0e-103 377.9 320 59.4
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 8.0e-103 377.9 323 58.5
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 1.1e-102 377.5 304 61.8
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.4e-102 377.1 299 62.2
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.4e-102 377.1 299 62.2
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.4e-102 377.1 320 58.8
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 1.4e-102 377.1 305 60.7
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.8e-102 376.7 305 62.6
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 4.0e-102 375.6 305 61.3
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 4.0e-102 375.6 321 61.1
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 5.2e-102 375.2 308 59.7
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 5.2e-102 375.2 302 60.6
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 6.8e-102 374.8 311 59.5
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 8.9e-102 374.4 304 59.5
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.2e-101 374.0 316 59.2
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 1.2e-101 374.0 304 60.5
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 1.2e-101 374.0 307 59.3
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 1.5e-101 373.6 317 59.0
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 2.0e-101 373.2 305 62.0
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 2.0e-101 373.2 305 60.7
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 2.6e-101 372.9 308 60.4
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 2.6e-101 372.9 250 69.6
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 2.6e-101 372.9 299 61.9
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 3.4e-101 372.5 316 59.2
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 4.4e-101 372.1 304 58.9
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 5.8e-101 371.7 304 61.2
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 5.8e-101 371.7 305 59.0
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 7.5e-101 371.3 304 60.9
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 7.5e-101 371.3 304 60.9
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 7.5e-101 371.3 304 60.2
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 9.8e-101 370.9 307 61.2
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.3e-100 370.5 303 61.1
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.3e-100 370.5 306 60.1
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 2.2e-100 369.8 303 60.7
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 2.2e-100 369.8 308 59.7
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 2.9e-100 369.4 305 59.7
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 3.7e-100 369.0 305 59.0
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 6.4e-100 368.2 281 63.7
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 6.4e-100 368.2 304 59.5
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 8.3e-100 367.9 305 60.0
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 1.1e-99 367.5 306 59.8
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 1.4e-99 367.1 311 57.9
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 1.4e-99 367.1 306 60.1
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.9e-99 366.7 321 57.3
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 3.2e-99 365.9 305 59.7
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 4.1e-99 365.5 304 59.5
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 5.4e-99 365.2 304 59.9
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 7.0e-99 364.8 303 59.7
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 9.2e-99 364.4 307 57.7
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 9.2e-99 364.4 316 56.6
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 9.2e-99 364.4 316 56.6
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.2e-98 364.0 310 58.7
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 1.6e-98 363.6 322 55.9
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 2.0e-98 363.2 303 58.4
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 6.0e-98 361.7 304 58.9
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 7.8e-98 361.3 305 60.3
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 7.8e-98 361.3 306 59.8
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 7.8e-98 361.3 305 61.0
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.3e-97 360.5 306 59.2
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 5.0e-97 358.6 306 60.5
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 8.6e-97 357.8 305 58.7
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 8.6e-97 357.8 314 58.6
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 8.6e-97 357.8 313 57.5
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 1.5e-96 357.1 305 58.4
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 1.9e-96 356.7 323 56.3
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.3e-96 355.9 309 56.6
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 5.6e-96 355.1 305 58.0
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 7.3e-96 354.8 305 57.4
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.6e-95 353.6 312 55.8
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 8.1e-95 351.3 221 73.3
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 8.1e-95 351.3 310 58.1
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.1e-94 350.9 305 56.7
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 4.0e-94 349.0 363 51.0
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 5.2e-94 348.6 309 56.0
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 5.8e-93 345.1 249 65.9
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.7e-92 343.6 303 58.1
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 2.2e-92 343.2 247 65.2
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 2.2e-92 343.2 305 57.4
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 3.7e-92 342.4 307 55.4
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 4.9e-92 342.0 307 55.4
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.4e-91 340.5 271 60.9
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 1.9e-91 340.1 307 55.4
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 1.9e-91 340.1 368 51.4
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 4.1e-91 339.0 307 55.0
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 5.4e-91 338.6 257 62.3
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 7.1e-91 338.2 257 62.3
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 9.2e-91 337.8 307 55.0
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.2e-90 337.4 309 54.0
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 1.2e-90 337.4 265 60.4
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.6e-90 337.0 257 62.6
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.7e-90 336.3 313 54.0
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 3.5e-90 335.9 307 55.0
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 1.0e-89 334.3 321 54.5
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 6.6e-89 331.6 304 54.9
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 1.1e-88 330.9 304 54.9
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 1.1e-88 330.9 304 55.3
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 1.1e-86 324.3 340 51.2
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.4e-86 323.9 349 50.1
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 1.5e-85 320.5 238 62.6
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 2.6e-85 319.7 308 53.6
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.6e-85 319.7 247 62.8
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 4.4e-85 318.9 321 50.8
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 9.9e-85 317.8 307 51.8
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-84 317.4 303 53.5
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.7e-84 317.0 225 67.1
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 8.4e-84 314.7 205 70.7
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 8.4e-84 314.7 303 53.1
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 4.6e-82 308.9 292 53.8
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 7.8e-82 308.1 258 56.2
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-81 307.0 262 55.3
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 2.5e-80 303.1 258 55.0
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 3.3e-80 302.8 261 54.4
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 5.6e-80 302.0 283 50.9
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.2e-79 300.8 224 66.1
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 1.2e-77 294.3 304 52.6
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.5e-77 293.9 189 69.3
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 5.8e-77 292.0 331 48.0
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 2.9e-76 289.7 302 50.7
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 4.9e-76 288.9 304 50.7
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 2.4e-75 286.6 248 56.0
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 6.6e-73 278.5 338 46.2
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.5e-72 277.3 235 58.7
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 3.1e-70 269.6 237 53.2
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 4.0e-70 269.2 237 53.6
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 6.9e-70 268.5 258 51.9
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 2.0e-69 266.9 237 52.7
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 3.4e-69 266.2 237 52.7
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 5.8e-69 265.4 267 50.2
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 9.9e-69 264.6 262 51.9
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 1.3e-68 264.2 239 53.1
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 1.7e-68 263.8 237 52.7
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 1.9e-67 260.4 237 51.9
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 1.9e-67 260.4 237 51.9
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 1.9e-67 260.4 237 51.9
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 2.1e-66 256.9 251 49.8
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 5.3e-62 242.3 155 70.3
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 2.2e-60 236.9 155 69.7
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.9e-59 233.8 234 52.6
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 2.7e-58 229.9 178 60.1
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 3.0e-57 226.5 203 54.7
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 2.8e-55 219.9 166 59.0
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.8e-55 219.2 150 69.3
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.4e-54 216.9 257 43.2
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 4.0e-54 216.1 152 69.7
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 6.9e-54 215.3 203 51.2
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.2e-53 214.5 242 46.7
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.5e-53 214.2 316 41.5
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.2e-52 210.3 259 44.4
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 1.2e-50 204.5 212 50.9
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 1.8e-49 200.7 200 53.5
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 4.5e-45 186.0 248 41.9
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 7.6e-45 185.3 306 36.3
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 1.0e-44 184.9 266 39.5
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 1.4e-43 181.0 233 40.8
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 9.4e-43 178.3 266 40.6
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.2e-42 177.9 315 36.2
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.4e-41 174.5 249 36.9
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 7.9e-34 148.7 167 49.1
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.5e-32 144.4 136 52.9
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 9.7e-32 141.7 177 46.3
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 3.7e-31 139.8 77 76.6
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 8.2e-31 138.7 104 67.3
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 7.2e-27 125.6 124 54.0
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.6e-26 124.4 235 32.8
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.7e-26 122.9 84 65.5
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 3.3e-24 116.7 111 50.5
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.7e-23 113.2 137 46.7
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 9.1e-22 108.6 91 52.7
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 3.1e-14 83.6 46 78.3
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 8.5e-12 75.5 114 36.8
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.8e-09 65.5 51 56.9
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.8e-09 65.5 51 56.9
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.0e-08 64.3 51 54.9
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.7e-08 62.8 51 52.9
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 9.8e-08 62.0 37 75.7


User provided reference genes

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