Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 5.2e-106 387.9 218 100.0
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.5e-54 215.7 209 62.7
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 6.0e-54 214.9 207 63.3
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 2.3e-53 213.0 204 64.7
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 2.3e-53 213.0 204 64.7
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.1e-52 210.7 204 64.7
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.9e-52 209.9 204 64.2
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 2.5e-52 209.5 204 63.2
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 2.5e-52 209.5 204 64.7
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 7.4e-52 208.0 205 62.4
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 9.6e-52 207.6 204 65.2
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 9.6e-52 207.6 204 65.2
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.6e-51 206.8 205 64.4
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.6e-51 206.8 204 63.7
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 2.1e-51 206.5 202 59.9
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 2.8e-51 206.1 204 65.2
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 2.8e-51 206.1 202 62.9
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 3.7e-51 205.7 202 60.4
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 8.1e-51 204.5 204 63.2
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 1.1e-50 204.1 203 64.5
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 1.4e-50 203.8 204 61.8
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.4e-50 203.8 202 62.4
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.8e-50 203.4 206 61.2
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.8e-50 203.4 205 62.4
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.4e-50 203.0 204 61.3
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 3.1e-50 202.6 205 62.9
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 3.1e-50 202.6 205 62.4
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 5.3e-50 201.8 205 61.0
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 6.9e-50 201.4 203 62.6
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.2e-49 200.7 203 62.6
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.5e-49 200.3 203 62.6
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.5e-49 200.3 204 62.3
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.6e-49 199.5 205 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.4e-49 199.1 158 64.6
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 3.4e-49 199.1 204 61.8
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 4.5e-49 198.7 202 60.9
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 4.5e-49 198.7 202 62.4
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 5.8e-49 198.4 205 62.4
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 5.8e-49 198.4 202 63.4
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 5.8e-49 198.4 202 63.4
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 7.6e-49 198.0 204 61.3
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.0e-48 197.6 203 62.1
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 1.3e-48 197.2 202 62.4
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.3e-48 197.2 202 62.9
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.3e-48 197.2 203 60.6
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.3e-48 197.2 202 62.9
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 1.7e-48 196.8 202 60.9
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.2e-48 196.4 202 60.4
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 2.9e-48 196.1 204 62.3
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 2.9e-48 196.1 203 60.6
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 2.9e-48 196.1 203 60.6
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 2.9e-48 196.1 203 62.1
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 2.9e-48 196.1 204 60.8
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 3.8e-48 195.7 204 61.8
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 3.8e-48 195.7 204 61.8
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 4.9e-48 195.3 204 61.3
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 4.9e-48 195.3 202 60.9
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 6.5e-48 194.9 199 61.3
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 6.5e-48 194.9 203 61.6
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.1e-47 194.1 138 69.6
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.1e-47 194.1 205 61.0
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.1e-47 194.1 199 62.8
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.1e-47 194.1 203 61.1
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.9e-47 193.4 141 67.4
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 1.9e-47 193.4 202 60.4
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 2.5e-47 193.0 206 61.2
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.5e-47 193.0 213 59.6
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 2.5e-47 193.0 206 61.2
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 3.2e-47 192.6 202 61.4
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.2e-47 192.6 213 59.6
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.2e-47 192.6 213 59.6
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 4.2e-47 192.2 199 62.8
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 4.2e-47 192.2 201 61.2
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 4.2e-47 192.2 204 60.8
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 5.5e-47 191.8 209 60.8
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 5.5e-47 191.8 205 60.0
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 5.5e-47 191.8 203 61.1
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 5.5e-47 191.8 203 61.6
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 5.5e-47 191.8 202 61.4
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 5.5e-47 191.8 202 61.4
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 5.5e-47 191.8 202 61.4
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 5.5e-47 191.8 205 61.0
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 7.1e-47 191.4 214 50.0
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 7.1e-47 191.4 203 57.1
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 9.3e-47 191.0 203 61.6
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 9.3e-47 191.0 203 61.6
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 9.3e-47 191.0 199 62.3
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 1.2e-46 190.7 199 61.8
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 2.1e-46 189.9 202 60.4
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 2.7e-46 189.5 203 60.1
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 3.5e-46 189.1 204 59.8
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 4.6e-46 188.7 203 60.6
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 4.6e-46 188.7 203 59.6
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 6.0e-46 188.3 204 59.3
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 6.0e-46 188.3 200 61.0
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.0e-45 187.6 205 58.0
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.8e-45 186.8 202 58.9
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 2.3e-45 186.4 156 60.3
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 3.9e-45 185.7 203 59.1
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.9e-45 185.7 157 59.2
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 6.7e-45 184.9 202 58.9
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 2.5e-44 183.0 203 57.1
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 9.6e-44 181.0 208 60.6
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 6.3e-43 178.3 201 59.7
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 6.3e-43 178.3 247 51.4
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.0e-41 173.3 202 57.9
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 3.4e-41 172.6 269 47.2
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.3e-40 170.6 178 60.7
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.9e-40 169.5 165 66.1
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.2e-39 166.0 169 65.1
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 1.2e-38 164.1 101 73.3
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.6e-38 163.7 205 57.1
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 3.6e-38 162.5 202 55.9
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 5.1e-37 158.7 138 59.4
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 5.1e-37 158.7 202 47.5
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.4e-34 149.8 198 56.1
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.6e-33 146.4 147 53.7
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 2.2e-32 143.3 232 47.0
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.2e-32 143.3 205 51.2
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 6.5e-32 141.7 134 53.0
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.5e-31 138.7 146 54.1
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 2.6e-28 129.8 104 62.5
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.7e-28 128.6 120 59.2
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 2.4e-26 123.2 218 39.9
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.0e-25 120.2 130 66.2
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 5.0e-24 115.5 227 45.8
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.9e-23 113.6 214 44.9
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.7e-22 109.0 158 43.0
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.4e-20 101.7 132 44.7
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 7.5e-12 75.1 207 33.3
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 9.7e-12 74.7 284 33.5
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.7e-08 63.9 143 27.3
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 4.2e-07 59.3 102 52.0


User provided reference genes

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