Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 2460.3 1207 100.0
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1385.5 1226 58.3
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1364.4 1219 58.7
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1355.5 1230 57.7
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1340.5 1224 57.1
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1281.5 1203 54.9
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 0.0e+00 1214.5 1048 59.6
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1182.5 1196 51.7
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1165.2 1192 51.0
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1164.4 1194 50.8
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1162.1 1192 50.8
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1154.0 1192 50.6
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1147.5 1189 50.6
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1142.1 1196 50.3
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1139.8 1193 50.2
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1139.4 1192 49.6
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1137.9 1207 50.6
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1137.1 1197 49.8
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1136.3 1206 48.4
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1135.6 1195 50.0
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1135.6 1201 50.0
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1131.3 1207 49.8
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1129.4 1195 49.6
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1128.2 1194 49.7
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1127.5 1201 49.2
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1127.5 1209 49.7
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1127.1 1198 49.4
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1126.7 1198 49.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1126.3 1201 49.5
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1125.9 1194 49.2
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1125.2 1201 49.1
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1122.8 1201 49.1
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1122.8 1205 49.5
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1120.9 1203 49.8
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1120.5 1207 49.9
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1120.5 1202 49.2
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1120.1 1203 48.9
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1120.1 1189 49.1
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1118.6 1191 49.1
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1118.2 1195 49.5
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1115.5 1198 49.8
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1114.4 1198 48.8
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1113.2 1204 49.1
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1111.3 1200 49.5
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1110.5 1202 48.8
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1109.4 1225 48.8
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1109.4 1205 48.7
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1105.9 1202 48.2
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1105.5 1199 48.0
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1099.3 1199 48.5
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1091.3 1195 48.0
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1090.9 1201 48.3
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1090.5 1198 48.7
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1087.8 1192 47.9
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1086.6 1204 48.5
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1085.9 1280 45.9
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1082.0 1200 48.2
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1078.2 1191 47.9
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1076.6 1199 48.2
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 8.3e-312 1073.9 1158 49.1
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 2.5e-311 1072.4 1164 48.5
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 3.3e-311 1072.0 1300 45.6
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 3.3e-311 1072.0 1188 47.7
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 5.8e-311 1071.2 1188 48.4
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 9.9e-311 1070.5 1194 47.7
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 4.8e-310 1068.1 1196 47.9
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 1.4e-309 1066.6 1198 47.2
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 3.1e-309 1065.4 1196 48.1
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 4.0e-309 1065.1 1199 47.5
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 9.0e-309 1063.9 1213 47.3
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 2.6e-308 1062.4 1191 47.6
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 3.4e-308 1062.0 1198 47.8
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 3.4e-308 1062.0 1199 47.5
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 7.6e-308 1060.8 1199 47.5
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 1.0e-307 1060.4 1198 46.7
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 1.0e-307 1060.4 1193 46.7
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 1.7e-307 1059.7 1205 47.4
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 1.7e-307 1059.7 1200 47.4
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 2.9e-307 1058.9 1195 47.0
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 3.8e-307 1058.5 1230 46.7
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 2.5e-306 1055.8 1205 47.3
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 2.5e-306 1055.8 1203 47.3
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 1.6e-305 1053.1 1191 47.4
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 1.3e-304 1050.0 1203 47.5
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 1.8e-304 1049.7 1203 47.4
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 5.9e-300 1034.6 1147 48.3
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 7.7e-300 1034.2 1203 46.5
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 7.2e-298 1027.7 1097 49.1
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 1.1e-295 1020.4 1205 46.3
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 3.3e-295 1018.8 1195 46.0
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 5.7e-295 1018.1 1196 46.8
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 4.1e-293 1011.9 1293 44.0
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.5e-287 993.4 1461 40.8
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 1.7e-283 979.9 1185 44.7
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 4.7e-281 971.8 1197 44.5
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 1.1e-277 960.7 946 52.9
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 1.6e-273 946.8 1201 43.0
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 1.6e-268 930.2 1066 47.8
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.4e-261 907.1 939 50.4
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 1.2e-257 894.0 1188 42.6
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 9.2e-253 877.9 1180 41.9
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 1.6e-252 877.1 943 48.6
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 2.1e-241 840.1 1116 42.5
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 3.3e-210 736.5 829 48.3
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 1.4e-208 731.1 1188 37.7
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.1e-200 703.4 847 46.2
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 2.6e-199 700.3 780 48.1
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.4e-197 694.5 790 47.3
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 5.1e-187 659.4 772 46.1
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 7.4e-186 655.6 745 48.3
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 6.9e-184 649.0 857 44.3
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 2.0e-183 647.5 736 47.3
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 3.4e-175 620.2 740 45.9
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.0e-171 607.1 726 46.4
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 7.4e-170 602.4 857 42.5
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 6.7e-163 579.3 661 48.1
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 2.8e-161 573.9 689 46.2
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.1e-136 492.3 510 49.0
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 2.5e-133 481.1 478 51.0
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.7e-127 461.1 520 48.3
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 3.6e-116 424.1 406 51.7
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 8.4e-113 412.9 583 42.0
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.9e-104 385.2 1396 26.8
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 6.6e-102 376.7 1237 27.2
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 1.6e-92 345.5 383 49.6
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 2.3e-86 325.1 340 48.8
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 3.0e-86 324.7 411 43.6
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 3.3e-85 321.2 353 48.7
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 5.7e-61 240.7 276 44.2
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 7.0e-27 127.5 139 45.3
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 8.0e-23 114.0 163 38.0
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.2e-20 105.9 82 53.7
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 9.2e-19 100.5 102 52.0
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 4.0e-14 85.1 119 39.5
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 7.5e-13 80.9 152 32.2
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 3.7e-12 78.6 140 35.7
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 1.6e-10 73.2 54 57.4
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 2.0e-10 72.8 157 31.2
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 7.3e-08 64.3 41 65.9
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 9.5e-08 63.9 218 28.9
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 1.2e-07 63.5 174 29.3
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.1e-07 62.8 46 65.2
Haze_26842 Corylus avellana HOM05D000032 ORTHO05D028824 3.6e-07 62.0 154 27.9
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 1.4e-06 60.1 118 31.4
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 1.4e-06 60.1 136 27.9
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.8e-06 59.7 69 43.5
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 3.1e-06 58.9 122 31.1
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 5.2e-06 58.2 94 33.0
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 8.9e-06 57.4 123 28.5
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 8.9e-06 57.4 128 25.8


User provided reference genes

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