Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 3284.2 1702 100.0
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1773.1 1834 54.2
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1689.9 1787 52.3
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1549.3 1778 49.6
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 1439.5 1745 47.7
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 1408.3 1781 45.9
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 1395.6 1780 46.0
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 1390.2 1799 45.2
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 1385.5 1746 46.2
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 1381.7 1760 45.7
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 1380.9 1739 46.2
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1380.5 1789 45.6
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 1375.5 1784 45.3
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1375.1 1769 45.4
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 1374.4 1780 45.5
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 1373.2 1761 45.3
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 1372.8 1760 45.1
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1370.9 1778 45.3
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1370.5 1756 45.0
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 1369.8 1823 44.4
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1369.8 1779 45.2
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1367.1 1772 45.0
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1365.5 1780 45.2
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 1360.1 1748 46.1
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 1358.6 1727 45.8
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1357.4 1711 45.3
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 1356.7 1776 45.6
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1356.3 1738 46.3
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 1356.3 1763 45.0
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1352.4 1743 45.9
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1351.7 1787 44.3
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 1351.3 1753 45.4
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1349.7 1758 45.4
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 1349.3 1821 44.5
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 1342.8 1614 47.0
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1340.9 1763 45.4
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1340.1 1476 50.7
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 1338.6 1749 44.7
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1333.9 1790 44.4
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1333.9 1729 45.2
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1329.3 1780 44.8
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 1328.5 1730 44.8
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1328.2 1754 45.3
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1325.8 1807 43.9
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 1323.1 1780 44.1
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1323.1 1807 44.8
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 1322.4 1725 44.5
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1320.8 1759 44.7
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1319.7 1825 43.4
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 1318.5 1847 43.5
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1315.8 1522 48.8
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1314.3 1634 46.4
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 1310.4 1746 44.4
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1308.1 1780 43.5
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1307.7 1785 43.4
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1303.1 1795 43.5
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1300.4 1752 43.8
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1300.0 1574 47.1
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1298.5 1811 43.2
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 1298.5 1770 43.7
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1297.3 1757 44.1
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 1295.4 1869 42.8
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 1295.0 1784 43.8
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1291.2 1487 48.9
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1289.6 1686 44.7
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1288.1 1797 42.6
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1286.9 1811 42.4
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1276.5 1780 43.4
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1276.2 1811 42.6
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1276.2 1713 44.1
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1274.2 1809 42.7
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1273.8 1807 42.5
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1273.1 1806 42.5
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1273.1 1806 42.5
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1272.3 1810 42.8
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1270.4 1746 43.8
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1268.8 1639 45.0
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1267.7 1757 44.5
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1264.6 1798 42.7
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1264.6 1798 42.7
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1258.8 1822 42.2
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1253.4 1517 48.2
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1253.4 1750 44.1
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1250.0 1862 41.8
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1249.6 1758 43.7
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1245.3 1429 49.5
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1230.3 1575 45.5
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1228.0 1791 41.4
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1226.1 1801 42.4
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1210.7 1816 41.0
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1186.8 1500 45.6
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1182.5 1776 42.6
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1182.5 1682 42.6
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1162.1 1639 42.7
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1158.7 1744 41.7
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1158.3 1554 44.1
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 0.0e+00 1100.5 1515 43.4
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 0.0e+00 1100.1 1079 56.0
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.5e-311 1072.4 1364 45.2
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 7.5e-285 984.9 1382 42.5
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 4.3e-256 889.4 912 53.2
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.8e-241 840.9 963 49.7
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 3.1e-222 776.9 869 49.0
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 6.9e-222 775.8 1191 41.0
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 5.3e-206 723.0 1001 44.5
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 9.2e-166 589.3 644 49.4
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 4.2e-142 510.8 795 42.6
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 3.3e-131 474.6 488 52.0
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.8e-130 470.7 898 36.7
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 7.9e-125 453.4 511 48.7
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.2e-118 431.4 643 42.1
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.4e-110 406.0 707 37.5
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 2.8e-106 391.7 502 46.6
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.2e-102 377.9 275 72.0
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 7.9e-101 373.6 370 53.8
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 5.9e-96 357.5 465 46.2
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 2.3e-92 345.5 423 48.5
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 3.3e-91 341.7 436 45.2
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.1e-85 322.4 483 42.4
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 3.3e-83 315.1 563 36.8
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 7.0e-81 307.4 1393 23.7
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.6e-69 269.6 441 39.9
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.7e-69 268.1 329 45.6
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.2e-61 243.4 262 51.5
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.0e-60 240.4 301 42.2
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.5e-54 219.9 333 42.9
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 6.1e-53 214.5 508 28.7
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.3e-52 212.6 424 38.0
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 3.1e-44 185.7 370 34.6
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.4e-28 132.9 187 43.9
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.0e-28 132.1 345 32.8
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 4.4e-27 128.6 111 58.6
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.7e-18 100.1 256 31.6
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 4.9e-18 98.6 93 50.5
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.1e-17 97.4 116 41.4
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 1.4e-17 97.1 70 62.9
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 4.6e-16 92.0 78 57.7
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 4.6e-16 92.0 92 50.0
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 7.8e-16 91.3 125 44.0
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 1.0e-15 90.9 97 46.4
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 1.7e-15 90.1 269 26.8
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.7e-15 90.1 154 35.7
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 3.0e-15 89.4 93 48.4
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 3.9e-15 89.0 73 61.6
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.9e-14 86.7 194 35.1
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 2.1e-13 83.2 87 46.0
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 6.2e-13 81.6 86 45.3
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 1.8e-12 80.1 69 53.6
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 4.0e-12 79.0 124 39.5
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.9e-09 70.1 61 57.4
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.4e-09 69.7 50 64.0
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 3.2e-09 69.3 65 55.4
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 7.1e-09 68.2 50 62.0
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.0e-08 65.1 130 33.1
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 7.9e-08 64.7 68 51.5
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 3.0e-07 62.8 102 41.2
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 3.9e-07 62.4 78 44.9
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 3.9e-07 62.4 71 49.3
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 1.5e-06 60.5 70 48.6


User provided reference genes

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