Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 0.0e+00 1295.4 656 100.0
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 4.3e-273 944.5 650 73.4
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 1.8e-271 939.1 649 72.4
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 4.1e-271 937.9 651 71.9
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 2.0e-270 935.6 649 72.1
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 3.4e-270 934.9 652 71.6
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 4.5e-270 934.5 649 72.0
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 4.5e-270 934.5 652 72.4
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 7.6e-270 933.7 650 71.8
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 5.0e-269 931.0 649 72.3
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 1.1e-268 929.9 649 71.6
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 1.9e-268 929.1 650 71.1
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.9e-268 929.1 648 72.2
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 3.2e-268 928.3 651 71.3
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 3.2e-268 928.3 651 70.8
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 4.2e-268 927.9 651 72.4
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 7.2e-268 927.2 652 72.2
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 1.2e-267 926.4 658 70.8
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 1.6e-267 926.0 651 72.0
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 2.1e-267 925.6 653 72.0
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 2.7e-267 925.2 650 70.9
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 3.6e-267 924.9 650 71.2
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 4.6e-267 924.5 647 72.0
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 4.6e-267 924.5 650 70.5
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 6.1e-267 924.1 652 71.6
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 7.9e-267 923.7 650 71.2
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 7.9e-267 923.7 650 71.2
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 1.0e-266 923.3 650 71.1
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 3.0e-266 921.8 652 71.6
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 3.9e-266 921.4 651 71.7
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 3.9e-266 921.4 652 71.0
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 6.7e-266 920.6 650 70.5
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 6.7e-266 920.6 650 70.5
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 6.7e-266 920.6 651 71.9
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 1.1e-265 919.8 650 70.3
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 1.1e-265 919.8 652 70.7
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 1.1e-265 919.8 655 71.0
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.5e-265 919.5 650 70.5
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 1.5e-265 919.5 658 70.2
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 1.5e-265 919.5 658 70.2
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 1.9e-265 919.1 652 71.6
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 2.5e-265 918.7 656 71.5
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 3.3e-265 918.3 672 69.2
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 5.7e-265 917.5 655 70.2
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 5.7e-265 917.5 651 70.8
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 7.4e-265 917.1 652 71.0
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 2.8e-264 915.2 651 71.4
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 8.2e-264 913.7 658 69.8
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 1.1e-263 913.3 656 70.6
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 5.3e-263 911.0 660 69.4
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 5.3e-263 911.0 653 71.1
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 9.1e-263 910.2 655 69.9
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 1.2e-262 909.8 652 70.9
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 1.5e-262 909.4 681 68.4
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 1.5e-262 909.4 680 68.2
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 2.6e-262 908.7 652 70.9
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 3.4e-262 908.3 648 69.8
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 4.5e-262 907.9 649 70.3
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 2.9e-261 905.2 653 69.8
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 5.0e-261 904.4 668 68.6
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 8.5e-261 903.7 654 70.5
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 8.5e-261 903.7 643 71.4
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 1.4e-260 902.9 652 70.4
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 9.4e-260 900.2 652 69.3
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 9.4e-260 900.2 655 68.5
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.2e-259 899.8 657 68.5
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 2.1e-259 899.0 654 70.2
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 2.1e-259 899.0 651 69.1
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 2.7e-259 898.7 656 68.0
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 4.7e-259 897.9 655 68.7
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 6.1e-259 897.5 662 69.3
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 1.8e-258 896.0 681 67.0
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 2.3e-258 895.6 672 68.5
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 8.8e-258 893.6 652 68.7
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 1.1e-257 893.3 655 68.1
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 3.3e-257 891.7 673 67.3
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 2.8e-256 888.6 649 68.6
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 1.1e-255 886.7 648 68.4
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 1.4e-252 876.3 652 68.6
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.5e-252 875.5 678 68.0
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 9.4e-252 873.6 626 70.0
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 5.2e-250 867.8 698 65.2
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 4.4e-249 864.8 662 68.6
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 1.8e-242 842.8 742 61.3
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.6e-235 819.7 648 65.6
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.3e-232 807.4 672 63.2
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.7e-230 802.4 652 63.5
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 3.8e-229 798.5 659 64.3
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 5.5e-228 794.7 591 68.2
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 2.1e-227 792.7 599 66.8
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 3.6e-219 765.4 606 65.7
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 2.2e-216 756.1 652 60.7
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 7.3e-212 741.1 517 69.6
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 9.5e-212 740.7 652 61.5
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.1e-210 735.7 623 61.8
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.4e-207 726.9 690 54.9
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 8.1e-203 711.1 692 55.9
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.2e-200 703.0 451 77.2
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 5.4e-199 698.4 692 55.3
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 4.6e-182 642.1 473 67.2
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 3.3e-180 636.0 669 51.4
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 2.3e-173 613.2 674 51.6
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.9e-167 593.6 390 75.4
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 2.4e-162 576.6 518 58.3
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 8.2e-147 525.0 336 78.3
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 3.8e-144 516.2 343 75.8
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 4.4e-140 502.7 335 74.9
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.5e-137 494.2 356 70.5
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 4.0e-125 453.0 569 47.6
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 5.5e-119 432.6 367 63.8
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 1.6e-110 404.4 315 64.4
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 4.9e-107 392.9 314 63.1
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 4.1e-106 389.8 312 62.2
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 7.0e-98 362.5 477 45.9
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.6e-86 324.7 307 56.7
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.8e-70 270.8 214 62.1
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.1e-58 232.3 216 54.6
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 2.7e-49 201.1 168 67.9
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 2.4e-45 188.0 205 46.3
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 2.6e-44 184.5 104 79.8
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 5.0e-43 180.3 241 49.4
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 3.2e-42 177.6 176 50.0
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 3.9e-40 170.6 219 48.4
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 7.9e-33 146.4 142 52.8
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 2.3e-32 144.8 86 84.9
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 3.0e-32 144.4 377 30.5
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 6.9e-29 133.3 87 73.6
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 9.1e-29 132.9 87 73.6
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 7.7e-28 129.8 87 72.4
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.2e-25 122.5 87 69.0
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.6e-25 122.1 460 30.0
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 3.7e-22 110.9 98 55.1
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 5.9e-20 103.6 86 66.3
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 7.7e-20 103.2 68 76.5
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 1.7e-19 102.1 68 75.0
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 4.2e-18 97.4 112 47.3
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 5.2e-16 90.5 55 80.0
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 9.7e-15 86.3 49 85.7
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.3e-14 85.9 54 75.9
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 2.8e-14 84.7 49 81.6
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-13 82.8 197 33.5
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-13 82.4 109 52.3
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 1.8e-13 82.0 62 67.7
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 4.2e-10 70.9 81 54.3
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.6e-09 68.9 68 47.1
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 4.7e-09 67.4 37 83.8
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.2e-07 62.8 102 42.2
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 2.6e-07 61.6 63 57.1
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 2.2e-06 58.5 33 84.8
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 6.3e-06 57.0 43 60.5


User provided reference genes

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