Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO111G0100 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.5e-247 857.8 426 100.0
SMO111G0027 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 8.9e-118 427.9 343 69.7
SMO083G0001 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.2e-116 423.3 486 54.7
SMO140G0090 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.4e-115 419.9 371 65.8
SMO111G0226 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 5.4e-115 418.7 350 67.7
SMO111G0153 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 5.0e-113 412.1 444 56.8
SMO083G0010 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.0e-97 359.8 354 59.6
SMO140G0066 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.3e-94 350.1 329 61.7
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 4.7e-87 325.9 474 43.5
SMO140G0012 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.0e-81 308.1 286 61.5
SMO200G0255 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.9e-81 306.2 270 64.1
SMO111G0203 Selaginella moellendorffii HOM05D001088 ORTHO05D013615 5.6e-80 302.4 357 52.9
SMO111G0113 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.1e-78 298.1 312 58.0
SMO111G0064 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.3e-73 280.4 310 55.2
SMO215G0003 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 9.9e-69 265.0 318 52.5
SMO160G0005 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.1e-59 235.0 381 43.8
SMO140G0060 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.9e-48 197.6 182 62.1
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 5.0e-36 156.4 292 32.9
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 1.4e-33 148.3 247 33.2
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 3.9e-33 146.7 277 32.5
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 2.2e-31 141.0 289 29.4
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 6.3e-31 139.4 292 29.1
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 1.1e-30 138.7 278 28.8
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 1.8e-30 137.9 278 30.6
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 1.8e-30 137.9 292 28.8
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 2.4e-30 137.5 266 29.7
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 3.1e-30 137.1 291 28.9
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 9.1e-30 135.6 263 30.4
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 2.6e-29 134.0 283 28.6
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 2.6e-29 134.0 272 30.9
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 2.6e-29 134.0 281 29.5
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 2.6e-29 134.0 271 31.4
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 3.5e-29 133.7 278 30.6
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 7.7e-29 132.5 276 30.1
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 7.7e-29 132.5 292 28.1
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 7.7e-29 132.5 291 28.5
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 7.7e-29 132.5 270 29.6
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.3e-28 131.7 291 27.8
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.3e-28 131.7 271 29.9
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 1.7e-28 131.3 275 29.1
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 2.2e-28 131.0 291 28.2
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.2e-28 131.0 291 28.2
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.9e-28 130.6 270 30.4
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 3.8e-28 130.2 366 27.9
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 5.0e-28 129.8 279 29.4
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 5.0e-28 129.8 251 29.9
Hund18982 Selenicereus undatus HOM05D003161 ORTHO05D005173 6.5e-28 129.4 244 31.1
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 6.5e-28 129.4 281 28.8
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 8.5e-28 129.0 325 27.4
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 8.5e-28 129.0 291 27.8
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 1.1e-27 128.6 292 27.1
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 1.1e-27 128.6 275 28.7
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 1.9e-27 127.9 290 29.3
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 1.9e-27 127.9 275 29.8
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 2.5e-27 127.5 331 27.5
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 2.5e-27 127.5 275 28.4
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 2.5e-27 127.5 289 26.6
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 3.2e-27 127.1 284 27.5
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 3.2e-27 127.1 305 27.9
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 4.2e-27 126.7 289 26.0
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 4.2e-27 126.7 280 28.2
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 4.2e-27 126.7 278 28.1
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 4.2e-27 126.7 320 27.2
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 5.5e-27 126.3 278 27.3
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 7.2e-27 125.9 273 28.6
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 9.4e-27 125.6 290 27.9
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 1.2e-26 125.2 271 28.8
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 1.2e-26 125.2 281 28.5
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 1.2e-26 125.2 262 29.4
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 1.6e-26 124.8 264 29.2
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 1.6e-26 124.8 270 28.9
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 4.7e-26 123.2 322 25.8
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 4.7e-26 123.2 322 25.8
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 4.7e-26 123.2 329 25.2
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 6.1e-26 122.9 280 26.8
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 6.1e-26 122.9 273 28.2
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 6.1e-26 122.9 278 28.1
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 8.0e-26 122.5 284 27.5
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 1.0e-25 122.1 284 27.5
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 1.0e-25 122.1 277 27.4
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 1.4e-25 121.7 283 27.2
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 1.4e-25 121.7 282 27.3
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 1.8e-25 121.3 284 27.1
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 1.8e-25 121.3 277 28.2
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 1.8e-25 121.3 275 29.1
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 1.8e-25 121.3 283 26.9
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 1.8e-25 121.3 276 28.3
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 1.8e-25 121.3 276 28.3
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 1.8e-25 121.3 276 28.6
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 1.8e-25 121.3 497 25.4
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 2.3e-25 120.9 280 28.6
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 2.3e-25 120.9 262 27.9
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 2.3e-25 120.9 278 27.0
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 2.3e-25 120.9 291 27.8
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 3.0e-25 120.6 332 25.9
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 3.0e-25 120.6 305 26.6
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 3.0e-25 120.6 293 25.9
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 3.9e-25 120.2 277 27.1
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 3.9e-25 120.2 283 27.9
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 3.9e-25 120.2 286 26.6
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 6.7e-25 119.4 504 24.4
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 1.1e-24 118.6 282 25.9
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 1.1e-24 118.6 283 26.1
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 1.5e-24 118.2 275 28.4
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 2.0e-24 117.9 280 27.9
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 2.0e-24 117.9 323 26.9
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 2.0e-24 117.9 284 27.8
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 2.6e-24 117.5 278 27.7
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 3.3e-24 117.1 284 26.1
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 3.3e-24 117.1 298 26.2
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 7.4e-24 115.9 287 26.1
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 9.7e-24 115.5 280 27.5
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 9.7e-24 115.5 275 28.0
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 9.7e-24 115.5 262 26.7
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 2.2e-23 114.4 283 24.4
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.8e-23 114.0 399 24.1
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 4.8e-23 113.2 275 27.3
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 6.3e-23 112.8 280 26.8
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 1.4e-22 111.7 283 26.9
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 7.0e-22 109.4 319 26.0
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 1.3e-20 105.1 270 25.9
CAN.G2759.1 Capsicum annuum HOM05D003161 ORTHO05D005173 5.0e-20 103.2 234 29.1
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 8.5e-20 102.4 270 27.0
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 6.1e-18 96.3 232 26.7
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 1.0e-17 95.5 354 23.2
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 1.8e-17 94.7 149 34.2
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 9.8e-16 89.0 326 23.0
HanXRQChr13g0419181 Helianthus annuus HOM05D003161 ORTHO05D009435 1.1e-14 85.5 234 29.1
Lsat_1_v5_gn_5_134021 Lactuca sativa HOM05D003161 ORTHO05D005173 1.4e-14 85.1 180 30.6
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 2.5e-11 74.3 101 39.6
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 2.5e-11 74.3 249 22.1
CSS0040264 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 3.2e-11 73.9 178 25.3
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 1.2e-10 72.0 252 25.0
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 2.1e-10 71.2 115 34.8
Ah.15g091660 Amaranthus hybridus HOM05D003161 ORTHO05D005173 6.8e-09 66.2 171 26.9
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 3.4e-08 63.9 174 24.7
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 4.4e-08 63.5 72 43.1
HPP92_015877 Vanilla planifolia HOM05D003161 ORTHO05D005173 1.3e-07 62.0 77 41.6
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 4.9e-07 60.1 71 42.3
MD14G1050000 Malus domestica HOM05D003161 ORTHO05D005173 2.4e-06 57.8 172 26.2
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 5.4e-06 56.6 407 21.9


User provided reference genes

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