Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 0.0e+00 2407.5 1228 100.0
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 0.0e+00 1127.9 1265 49.3
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 0.0e+00 1127.9 1269 49.3
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 0.0e+00 1120.9 1268 49.1
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 0.0e+00 1113.6 1276 49.1
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 0.0e+00 1110.1 1290 47.8
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 0.0e+00 1109.4 1281 47.9
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 0.0e+00 1109.4 1269 48.5
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 0.0e+00 1108.6 1271 48.9
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 0.0e+00 1105.1 1263 49.3
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 0.0e+00 1098.6 1267 48.8
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 0.0e+00 1098.2 1265 48.3
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 0.0e+00 1096.6 1272 48.7
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 0.0e+00 1084.3 1271 47.8
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 4.2e-311 1071.6 1258 48.1
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 4.2e-311 1071.6 1269 47.4
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 2.2e-310 1069.3 1259 47.9
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 3.7e-310 1068.5 1266 46.2
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 4.6e-308 1061.6 1288 47.4
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 5.6e-306 1054.7 1271 45.6
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 5.6e-306 1054.7 1262 47.8
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 2.1e-305 1052.7 1252 48.1
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 2.8e-305 1052.4 1271 45.9
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 8.9e-304 1047.3 1253 46.8
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 2.0e-303 1046.2 1276 47.2
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 4.4e-303 1045.0 1394 43.9
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 5.8e-303 1044.6 1262 46.2
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 9.8e-303 1043.9 1260 46.3
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 9.8e-303 1043.9 1257 46.9
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 3.2e-301 1038.9 1273 46.6
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 1.3e-299 1033.5 1257 46.9
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 6.6e-299 1031.2 1270 46.4
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 1.1e-298 1030.4 1260 46.9
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 1.5e-298 1030.0 1283 44.7
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 3.6e-297 1025.4 1257 46.4
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 8.1e-297 1024.2 1253 46.2
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 8.1e-297 1024.2 1262 46.2
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 1.1e-296 1023.8 1269 46.0
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 1.4e-296 1023.5 1272 45.3
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 3.1e-296 1022.3 1270 46.5
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 5.2e-296 1021.5 1281 46.1
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 6.8e-296 1021.1 1257 46.2
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 8.9e-296 1020.8 1269 45.5
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 1.5e-295 1020.0 1265 46.5
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 2.6e-295 1019.2 1268 46.8
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 9.8e-295 1017.3 1276 45.7
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 1.7e-294 1016.5 1259 46.0
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 1.1e-293 1013.8 1264 46.4
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 5.4e-293 1011.5 1255 46.5
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 7.1e-293 1011.1 1282 46.1
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 2.7e-292 1009.2 1265 46.6
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 1.7e-291 1006.5 1254 45.6
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 8.6e-291 1004.2 1278 46.9
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 4.3e-290 1001.9 1253 45.5
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 3.6e-289 998.8 1286 46.5
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 2.0e-287 993.0 1251 44.0
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 5.8e-287 991.5 1253 44.7
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 7.6e-287 991.1 1253 45.0
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.7e-286 989.9 1269 44.2
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 3.8e-286 988.8 1247 45.2
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 6.4e-286 988.0 1272 44.6
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.4e-285 986.1 1271 44.4
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 4.1e-285 985.3 1285 44.7
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 4.1e-285 985.3 1285 44.7
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 1.2e-284 983.8 1249 45.6
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 1.2e-284 983.8 1271 45.6
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.1e-284 983.0 1271 44.1
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 3.5e-284 982.2 1286 44.6
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 4.6e-284 981.9 1253 44.3
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 1.3e-283 980.3 1288 45.0
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 5.1e-283 978.4 1271 44.0
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 1.5e-282 976.9 1283 44.6
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 1.5e-282 976.9 1259 44.2
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 5.6e-282 974.9 1280 44.2
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.2e-281 973.8 1251 44.7
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 2.4e-280 969.5 1284 46.0
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 2.4e-280 969.5 1262 43.5
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 2.4e-280 969.5 1232 46.3
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 5.8e-279 964.9 1266 44.0
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 5.8e-279 964.9 1275 44.5
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 3.8e-278 962.2 1269 44.0
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 4.9e-278 961.8 1268 45.7
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 1.1e-277 960.7 1250 44.5
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 1.4e-277 960.3 1263 43.6
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 3.2e-277 959.1 1279 43.5
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 7.1e-277 958.0 1254 44.3
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 1.0e-275 954.1 1271 44.5
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 5.1e-275 951.8 1247 43.9
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 5.1e-275 951.8 1258 44.4
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 1.8e-272 943.3 1274 44.5
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 9.0e-272 941.0 1300 43.5
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 5.4e-269 931.8 1331 41.8
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 2.8e-265 919.5 1251 43.3
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 2.6e-263 912.9 1142 44.7
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 4.5e-263 912.1 1261 43.0
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 1.9e-261 906.7 1291 42.8
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 2.4e-261 906.4 1278 42.1
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 2.1e-257 893.3 1319 42.5
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 2.9e-246 856.3 1251 40.8
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 3.1e-240 836.3 1256 40.0
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 2.7e-199 700.3 1286 35.5
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 2.8e-180 637.1 1185 36.5
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 3.6e-180 636.7 736 48.6
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 2.3e-179 634.0 1294 32.9
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 8.3e-177 625.5 817 45.5
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 2.1e-175 620.9 1196 35.4
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 1.3e-169 601.7 1232 33.8
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 7.9e-151 539.3 921 38.4
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 1.6e-143 515.0 1137 32.5
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 6.9e-139 499.6 776 40.2
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 6.9e-139 499.6 1330 30.2
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 1.5e-138 498.4 743 40.4
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 1.7e-137 495.0 659 42.3
Sabra16G0064500 Salix brachista HOM05D003161 ORTHO05D005173 7.7e-122 443.0 531 47.3
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 3.2e-112 411.0 1237 29.2
HPP92_027318 Vanilla planifolia HOM05D003161 ORTHO05D005173 1.5e-104 385.6 494 45.3
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 8.0e-103 379.8 535 42.2
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 5.9e-90 337.0 1035 29.6
Hund18982 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.3e-89 335.1 796 31.3
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 1.5e-85 322.4 1392 24.4
CSS0042321 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.9e-81 308.1 305 53.4
MD14G1050200 Malus domestica HOM05D003161 ORTHO05D005173 9.5e-80 303.1 494 36.6
TWI74G1605 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 5.2e-78 297.4 313 52.4
PSO210G4351 Papaver somniferum HOM05D003161 ORTHO05D005173 6.4e-76 290.4 312 51.0
TWI74G0321 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 2.4e-75 288.5 303 53.1
CAN.G2759.1 Capsicum annuum HOM05D003161 ORTHO05D005173 2.4e-67 261.9 832 29.2
CSS0008153 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.1e-62 246.5 387 40.1
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 7.8e-58 230.3 1376 21.9
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.2e-53 216.5 743 25.7
Zm00001eb302870 Zea mays HOM05D003161 ORTHO05D005173 1.7e-49 202.6 237 46.0
Hund18983 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.0e-45 189.1 164 60.4
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 1.2e-42 179.9 244 44.3
Os07g0203275 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 1.6e-42 179.5 195 46.2
CSS0040264 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.7e-41 176.0 199 45.2
CAN.G317.8 Capsicum annuum HOM05D003161 ORTHO05D005173 6.6e-41 174.1 134 64.2
SEGI_33580 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 6.2e-39 167.5 190 46.3
Ah.15g091660 Amaranthus hybridus HOM05D003161 ORTHO05D005173 1.1e-38 166.8 147 51.7
Psat2g048720 Pisum sativum HOM05D003161 ORTHO05D002506 4.0e-38 164.9 144 54.2
BcaB06g25562 Brassica carinata HOM05D003161 ORTHO05D005173 1.5e-37 162.9 133 61.7
Lsat_1_v5_gn_5_134021 Lactuca sativa HOM05D003161 ORTHO05D005173 6.4e-36 157.5 147 51.0
Hund18979 Selenicereus undatus HOM05D003161 ORTHO05D005173 6.4e-36 157.5 132 59.8
MD14G1050000 Malus domestica HOM05D003161 ORTHO05D005173 3.2e-35 155.2 207 43.0
SEGI_22431 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 1.9e-32 146.0 166 47.0
HanXRQChr13g0419181 Helianthus annuus HOM05D003161 ORTHO05D009435 4.3e-32 144.8 148 50.7
Aqoxy4G00694 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 4.8e-31 141.4 141 51.8
SMO111G0226 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.5e-27 129.0 643 25.3
SMO083G0010 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.7e-26 125.6 451 24.6
SMO111G0027 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.5e-26 125.2 558 23.5
HPP92_015877 Vanilla planifolia HOM05D003161 ORTHO05D005173 3.9e-25 121.7 263 33.5
Gohir.D08G094800 Gossypium hirsutum HOM05D003161 ORTHO05D019240 6.2e-23 114.4 199 39.2
SMO111G0113 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 5.3e-22 111.3 444 25.0
SMO111G0064 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 5.8e-21 107.8 463 24.0
Lsat_1_v5_gn_5_134001 Lactuca sativa HOM05D003161 ORTHO05D005173 1.3e-20 106.7 108 51.9
SMO111G0203 Selaginella moellendorffii HOM05D001088 ORTHO05D013615 1.3e-20 106.7 367 25.3
SMO111G0100 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.9e-19 102.8 270 27.0
SMO111G0153 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 5.5e-19 101.3 482 23.0
SMO200G0255 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 4.6e-18 98.2 270 28.1
SMO083G0001 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.3e-17 95.9 502 23.1
SMO140G0090 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.9e-17 95.1 497 23.7
HanXRQChr13g0388021 Helianthus annuus HOM05D003161 ORTHO05D005173 1.1e-16 93.6 97 48.5
Lsat_1_v5_gn_9_24981 Lactuca sativa HOM05D009325 ORTHO05D005173 1.5e-16 93.2 98 51.0
Lsat_1_v5_gn_8_97781 Lactuca sativa HOM05D003161 ORTHO05D005173 2.2e-15 89.4 115 45.2
Lsat_1_v5_gn_3_12560 Lactuca sativa HOM05D004807 ORTHO05D005915 3.7e-15 88.6 71 57.7
Medtr3g069250 Medicago truncatula HOM05D003161 ORTHO05D013615 6.3e-15 87.8 119 42.0
Gorai.007G198500 Gossypium raimondii HOM05D003161 ORTHO05D019240 7.7e-13 80.9 122 44.3
SMO140G0066 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.1e-11 77.0 333 23.4
Gohir.D05G345851 Gossypium hirsutum HOM05D003161 ORTHO05D010708 4.2e-11 75.1 64 56.2
Lsat_1_v5_gn_6_82341 Lactuca sativa HOM05D003208 ORTHO05D013695 5.5e-11 74.7 64 53.1
Lsat_1_v5_gn_8_160881 Lactuca sativa HOM05D003161 ORTHO05D005173 1.2e-10 73.6 52 59.6
Actinidia30948 Actinidia chinensis HOM05D003161 ORTHO05D005173 6.1e-10 71.2 88 47.7
Gohir.D06G091175 Gossypium hirsutum HOM05D003161 ORTHO05D019240 7.9e-10 70.9 171 35.1
FvH4_6g22213 Fragaria vesca HOM05D004516 ORTHO05D005194 1.8e-09 69.7 52 67.3
Gorai.011G237200 Gossypium raimondii HOM05D003161 ORTHO05D019240 2.3e-09 69.3 171 35.1
HPP92_015878 Vanilla planifolia HOM05D003161 ORTHO05D019240 6.7e-09 67.8 184 30.4
Gohir.D03G037600 Gossypium hirsutum HOM05D001706 ORTHO05D019240 2.0e-08 66.2 52 61.5
SMO215G0003 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 4.8e-07 61.6 222 26.1
HPP92_015876 Vanilla planifolia HOM05D003161 ORTHO05D005173 1.1e-06 60.5 69 50.7
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 2.4e-06 59.3 36 69.4
SMO160G0005 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 9.1e-06 57.4 135 29.6


User provided reference genes

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