Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 3228.3 1660 100.0
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2018.0 1715 63.5
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2008.4 1729 63.0
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 1964.5 1711 61.0
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 1954.1 1781 60.9
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 1946.8 1714 61.1
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 1924.4 1706 60.7
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 1916.4 1689 60.7
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 1909.8 1685 60.9
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 1902.1 1731 59.4
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1900.6 1711 59.4
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 1894.0 1689 60.7
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 1875.9 1734 58.7
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 1872.4 1723 59.0
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 1871.7 1731 58.5
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1869.7 1731 58.5
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 1861.3 1716 58.7
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1857.8 1721 58.9
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 1856.6 1725 58.3
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 1855.9 1705 59.2
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1855.1 1725 58.9
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 1851.6 1717 57.9
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 1822.0 1635 60.6
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1820.4 1723 58.0
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1808.1 1722 57.7
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 1802.7 1737 56.6
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1798.5 1724 57.7
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 1797.3 1740 57.2
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1796.6 1738 56.8
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 1796.2 1725 57.2
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 1795.8 1728 57.5
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1795.0 1724 57.5
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1788.5 1773 56.2
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1786.9 1725 57.4
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 1773.4 1735 56.6
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1771.9 1714 56.5
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1768.1 1767 55.7
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 1764.6 1790 55.5
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1761.9 1683 56.9
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1758.4 1604 59.5
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 1755.3 1702 56.3
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1752.3 1768 55.9
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1749.6 1731 56.3
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1748.4 1753 55.0
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1743.4 1728 56.3
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 1743.0 1696 56.9
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1741.1 1748 54.5
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1739.2 1755 54.1
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1738.0 1752 54.6
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1736.1 1717 55.4
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1733.8 1685 56.4
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1729.9 1678 56.3
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 1724.9 1712 57.6
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1723.4 1682 56.4
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1723.0 1680 56.2
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 1722.2 1702 56.2
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1719.1 1759 54.1
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1719.1 1702 55.5
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1718.7 1582 59.5
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1716.4 1762 53.7
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1714.5 1750 54.3
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1713.4 1755 54.0
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1713.0 1696 55.5
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1711.4 1699 56.1
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1710.3 1751 53.3
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1710.3 1751 53.3
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1710.3 1725 55.5
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1707.6 1694 54.8
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1706.4 1757 53.7
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1697.2 1750 53.5
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1697.2 1750 53.5
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1688.7 1776 52.8
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1686.4 1547 59.3
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1665.2 1713 56.3
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1651.0 1735 52.9
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1650.6 1425 62.2
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1647.5 1723 52.9
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1642.5 1361 63.9
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1641.3 1643 55.5
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1635.5 1620 56.1
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1626.3 1613 55.5
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1624.8 1792 52.7
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1608.2 1755 53.2
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1593.2 1398 61.8
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1590.9 1476 58.8
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1538.1 1531 55.3
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1534.2 1471 57.9
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1528.1 1742 51.0
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1510.7 1576 53.7
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1417.1 1697 49.4
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1412.1 1521 52.5
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1408.7 1408 54.4
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1406.3 1250 59.8
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1312.7 1391 52.4
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1200.7 1740 42.5
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1179.9 1721 42.8
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1171.0 1682 42.6
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1110.9 1683 41.2
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1100.1 1205 52.0
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1091.3 896 66.1
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 2.6e-298 1029.6 1025 55.6
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.9e-273 946.4 873 57.8
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 3.1e-267 926.4 995 50.6
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 2.1e-255 887.1 1454 38.9
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 6.5e-241 839.0 842 56.4
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 1.3e-228 798.1 656 63.0
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.4e-205 720.3 667 57.3
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 4.9e-204 716.5 789 50.8
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.5e-168 597.8 902 41.1
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 3.0e-161 574.3 498 60.2
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 6.4e-148 530.0 711 43.0
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 5.5e-139 500.4 434 60.1
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 9.4e-123 446.4 560 47.1
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 5.2e-113 414.1 450 52.2
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.2e-109 402.9 461 50.3
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.5e-104 386.0 446 50.9
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 4.0e-97 361.3 417 51.1
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 4.8e-95 354.4 370 53.5
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.7e-93 348.6 322 56.2
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 3.5e-93 348.2 300 60.7
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.6e-88 332.0 296 59.1
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.7e-84 319.3 379 47.8
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 1.9e-83 315.8 393 48.3
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.9e-83 315.8 425 44.2
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.6e-72 278.9 388 46.4
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.7e-69 268.9 364 45.1
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 3.4e-64 251.9 1743 23.2
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 2.3e-52 212.6 264 47.7
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 3.4e-48 198.7 277 43.0
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 9.6e-43 180.6 120 71.7
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 2.0e-40 172.9 399 30.8
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 8.1e-34 151.0 176 46.6
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 7.9e-29 134.4 223 35.0
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 8.2e-26 124.4 117 52.1
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 1.8e-25 123.2 92 62.0
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 2.0e-24 119.8 100 63.0
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 1.7e-23 116.7 153 43.8
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 5.0e-23 115.2 70 82.9
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 8.4e-23 114.4 90 60.0
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.9e-22 113.2 79 65.8
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 5.5e-22 111.7 91 58.2
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.5e-19 103.6 123 45.5
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 4.3e-19 102.1 97 52.6
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 2.8e-18 99.4 122 45.9
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 1.2e-16 94.0 79 54.4
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.2e-16 94.0 91 54.9
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 3.4e-16 92.4 92 57.6
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.2e-15 89.7 79 54.4
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.8e-15 89.0 333 27.6
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 2.5e-14 86.3 76 57.9
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 7.2e-14 84.7 68 63.2
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.6e-13 83.6 57 71.9
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 2.7e-13 82.8 84 57.1
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 4.6e-13 82.0 57 70.2
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.8e-12 80.1 83 54.2
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 5.1e-12 78.6 83 53.0
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 2.0e-11 76.6 95 47.4
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 1.3e-10 73.9 104 39.4
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.8e-10 72.8 196 32.7
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 3.1e-09 69.3 88 46.6
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 3.1e-09 69.3 244 26.6
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 4.1e-09 68.9 49 65.3
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 3.4e-08 65.9 139 34.5
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 4.5e-08 65.5 153 26.8
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 5.9e-08 65.1 71 52.1
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 5.9e-08 65.1 71 52.1
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 7.7e-08 64.7 71 52.1
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.9e-07 62.8 134 38.8
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 2.5e-06 59.7 50 60.0
SGA_v2.0_scaffold94G28616 Striga asiatica HOM05D001217 ORTHO05D001097 9.4e-06 57.8 59 40.7


User provided reference genes

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