Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21133 Sapria himalayana HOM05D004522 ORTHO05D005887 2.1e-266 921.8 456 100.0
Potri.006G279700 Populus trichocarpa HOM05D004522 ORTHO05D005887 1.4e-105 387.5 404 53.0
Sabra06G0216700 Salix brachista HOM05D004522 ORTHO05D005887 9.2e-105 384.8 404 52.5
Dinv38803 Davidia involucrata HOM05D004522 ORTHO05D005887 1.2e-104 384.4 404 51.2
vmacro18846 Vaccinium macrocarpon HOM05D004522 ORTHO05D005887 8.6e-103 378.3 426 48.1
Atru.chr7.2700 Acer truncatum HOM05D004522 ORTHO05D005887 1.5e-102 377.5 407 52.1
MD08G1125900 Malus domestica HOM05D004522 ORTHO05D005887 1.9e-102 377.1 407 51.4
RcHm_v2.0_Chr6g0305241 Rosa chinensis HOM05D004522 ORTHO05D005887 1.9e-102 377.1 407 51.6
Actinidia21721 Actinidia chinensis HOM05D004522 ORTHO05D005887 3.3e-102 376.3 401 52.1
FvH4_2g36580 Fragaria vesca HOM05D004522 ORTHO05D005887 3.3e-102 376.3 407 51.4
Hma1.2p1_0495F.1_g165690 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 3.3e-102 376.3 409 51.1
Sp7g29090 Schrenkiella parvula HOM05D004522 ORTHO05D005887 3.3e-102 376.3 421 49.9
Ca_01520_v3 Cicer arietinum L. HOM05D004522 ORTHO05D005887 4.3e-102 375.9 430 49.3
Aa31LG2G19120 Aethionema arabicum HOM05D004522 ORTHO05D005887 9.5e-102 374.8 425 49.4
CiPaw.07G210600 Carya illinoinensis HOM05D004522 ORTHO05D005887 9.5e-102 374.8 433 50.3
Prupe.1G457500 Prunus persica HOM05D004522 ORTHO05D005887 9.5e-102 374.8 407 51.1
Aa31LG2G19110 Aethionema arabicum HOM05D004522 ORTHO05D005887 1.2e-101 374.4 425 49.4
FAN20G0828 Fragaria x ananassa HOM05D004522 ORTHO05D005887 1.6e-101 374.0 407 51.1
SGA_v2.0_scaffold62G21366 Striga asiatica HOM05D004522 ORTHO05D005887 1.6e-101 374.0 439 48.3
Dinv37488 Davidia involucrata HOM05D004522 ORTHO05D005887 3.6e-101 372.9 403 50.6
Hma1.2p1_0534F.1_g173690 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 6.2e-101 372.1 409 51.1
Hma1.2p1_1265F.1_g271353 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 6.2e-101 372.1 409 51.1
CANSAT25G3238 Cannabis sativa HOM05D004522 ORTHO05D005887 8.1e-101 371.7 409 51.1
BolC1t00764H Brassica oleracea HOM05D004522 ORTHO05D005887 1.1e-100 371.3 383 53.5
QL12p025652 Quercus lobata HOM05D004522 ORTHO05D005887 1.1e-100 371.3 407 51.1
AT4G31210 Arabidopsis thaliana HOM05D004522 ORTHO05D005887 1.8e-100 370.5 388 52.6
Lj5g0011494 Lotus japonicus HOM05D004522 ORTHO05D005887 1.8e-100 370.5 425 49.2
CARHR239110 Cardamine hirsuta HOM05D004522 ORTHO05D005887 2.3e-100 370.2 388 52.6
MD15G1105700 Malus domestica HOM05D004522 ORTHO05D005887 3.1e-100 369.8 407 51.1
THA.LOC104819919 Tarenaya hassleriana HOM05D004522 ORTHO05D005887 3.1e-100 369.8 430 48.1
Ah.14g088390 Amaranthus hybridus HOM05D004522 ORTHO05D005887 4.0e-100 369.4 408 50.5
AL7G20870 Arabidopsis lyrata HOM05D004522 ORTHO05D005887 4.0e-100 369.4 388 52.1
A01p07030 Brassica napus HOM05D004522 ORTHO05D005887 5.2e-100 369.0 388 51.5
BraA01t00655Z Brassica rapa HOM05D004522 ORTHO05D005887 5.2e-100 369.0 388 51.5
CSS0030659 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 5.2e-100 369.0 399 51.1
Thhalv10024242m.g Eutrema salsugineum HOM05D004522 ORTHO05D005887 5.2e-100 369.0 447 47.9
Medtr1g009315 Medicago truncatula HOM05D004522 ORTHO05D005887 5.2e-100 369.0 404 51.0
Gohir.A06G108300 Gossypium hirsutum HOM05D004522 ORTHO05D005887 1.2e-99 367.9 393 52.2
C01p07770 Brassica napus HOM05D004522 ORTHO05D005887 1.5e-99 367.5 388 51.3
Gohir.D06G110400 Gossypium hirsutum HOM05D004522 ORTHO05D005887 1.5e-99 367.5 393 52.2
Gorai.010G125500 Gossypium raimondii HOM05D004522 ORTHO05D005887 1.5e-99 367.5 393 52.2
TWI63G0055 Tripterygium wilfordii HOM05D004522 ORTHO05D005887 1.5e-99 367.5 394 51.3
AUR62020658 Chenopodium quinoa HOM05D004522 ORTHO05D005887 2.0e-99 367.1 401 49.6
AUR62044451 Chenopodium quinoa HOM05D004522 ORTHO05D005887 2.0e-99 367.1 401 49.6
A03p60590 Brassica napus HOM05D004522 ORTHO05D005887 2.6e-99 366.7 388 51.3
BraA03t15100Z Brassica rapa HOM05D004522 ORTHO05D005887 2.6e-99 366.7 388 51.3
Lalb_Chr22g0361201 Lupinus albus HOM05D004522 ORTHO05D005887 2.6e-99 366.7 394 51.3
BcaC09g51903 Brassica carinata HOM05D004522 ORTHO05D005887 3.4e-99 366.3 388 51.3
Thecc.09G000400 Theobroma cacao HOM05D004522 ORTHO05D005887 3.4e-99 366.3 394 51.5
Medtr0245s0010 Medicago truncatula HOM05D004522 ORTHO05D005887 4.4e-99 365.9 404 50.7
EL10Ac2g03676 Beta vulgaris HOM05D004522 ORTHO05D005887 5.8e-99 365.5 403 48.6
BcaNung01535 Brassica carinata HOM05D004522 ORTHO05D005887 5.8e-99 365.5 388 51.3
BolC7t46304H Brassica oleracea HOM05D004522 ORTHO05D005887 5.8e-99 365.5 388 51.3
Phvul.002G181900 Phaseolus vulgaris HOM05D004522 ORTHO05D005887 7.5e-99 365.2 409 49.4
Cfa013296 Carpinus fangiana HOM05D004522 ORTHO05D005887 1.3e-98 364.4 407 50.4
Glyma.17G196500 Glycine max HOM05D004522 ORTHO05D005887 1.3e-98 364.4 401 50.1
COL.COLO4_18648 Corchorus olitorius HOM05D004522 ORTHO05D005887 1.7e-98 364.0 394 51.3
arahy.Tifrunner.gnm1.ann1.696W46 Arachis hypogaea HOM05D004522 ORTHO05D005887 2.2e-98 363.6 394 51.0
TPR.G12110 Trifolium pratense HOM05D004522 ORTHO05D005887 2.9e-98 363.2 430 48.6
CANSAT54G0998 Cannabis sativa HOM05D004522 ORTHO05D005887 3.7e-98 362.8 427 48.7
SalBow1G6309 Salvia bowleyana HOM05D004522 ORTHO05D005887 3.7e-98 362.8 390 50.3
Carub.0007s0933 Capsella rubella HOM05D004522 ORTHO05D005887 4.9e-98 362.5 388 52.1
Cpa.g.sc246.5 Carica papaya HOM05D004522 ORTHO05D005887 6.4e-98 362.1 393 50.1
C07p58490 Brassica napus HOM05D004522 ORTHO05D005887 1.1e-97 361.3 388 50.8
Lj8C583T4 Lonicera japonica HOM05D004522 ORTHO05D005887 1.4e-97 360.9 395 49.4
GSVIVG01035576001 Vitis vinifera HOM05D004522 ORTHO05D005887 1.4e-97 360.9 403 50.1
arahy.Tifrunner.gnm1.ann1.IIX4FM Arachis hypogaea HOM05D004522 ORTHO05D005887 1.9e-97 360.5 394 50.8
Ciclev10007345m.g Citrus clementina HOM05D004522 ORTHO05D005887 1.9e-97 360.5 430 50.0
Haze_21777 Corylus avellana HOM05D004522 ORTHO05D005887 2.4e-97 360.1 425 48.2
TAR629G0385 Trochodendron aralioides HOM05D004522 ORTHO05D005887 2.4e-97 360.1 401 49.4
Manes.03G000450 Manihot esculenta HOM05D004522 ORTHO05D005887 3.2e-97 359.8 385 50.1
SalBow1G4849 Salvia bowleyana HOM05D004522 ORTHO05D005887 3.2e-97 359.8 390 50.0
Rhsim08G0228200 Rhododendron simsii HOM05D004522 ORTHO05D005887 7.1e-97 358.6 430 47.2
Glyma.14G137100 Glycine max HOM05D004522 ORTHO05D005887 1.6e-96 357.5 400 50.0
Psat6g033400 Pisum sativum HOM05D004522 ORTHO05D005887 2.1e-96 357.1 404 50.7
Psat6g033360 Pisum sativum HOM05D004522 ORTHO05D005887 2.7e-96 356.7 400 50.2
Sc10g0004210 Simmondsia chinensis HOM05D004522 ORTHO05D005887 4.6e-96 355.9 411 47.4
MBI16_g42310_MAGBIO Magnolia biondii HOM05D004522 ORTHO05D005887 6.0e-96 355.5 426 46.7
Sed0008341 Sechium edule HOM05D004522 ORTHO05D005887 6.0e-96 355.5 395 49.1
FAN27G1482 Fragaria x ananassa HOM05D004522 ORTHO05D005887 7.8e-96 355.1 401 50.4
ClCG05G026380 Citrullus lanatus HOM05D004522 ORTHO05D005887 1.0e-95 354.8 410 48.3
Sed0013871 Sechium edule HOM05D004522 ORTHO05D005887 1.0e-95 354.8 432 47.2
Migut.C00355 Erythranthe guttata HOM05D004522 ORTHO05D005887 1.3e-95 354.4 431 46.9
Medtr1g009570 Medicago truncatula HOM05D004522 ORTHO05D005887 3.0e-95 353.2 404 50.0
Hund03258 Selenicereus undatus HOM05D004522 ORTHO05D005887 3.0e-95 353.2 403 48.4
ECA234G1339 Erigeron canadensis HOM05D004522 ORTHO05D005887 3.9e-95 352.8 400 48.8
Cc09_g04950 Coffea canephora HOM05D004522 ORTHO05D005887 7.3e-94 348.6 390 49.7
Eucgr.C02139 Eucalyptus grandis HOM05D004522 ORTHO05D005887 7.3e-94 348.6 438 46.8
Nitab4.5_0000844g0320 Nicotiana tabacum HOM05D004522 ORTHO05D005887 7.3e-94 348.6 401 47.6
Nitab4.5_0011308g0020 Nicotiana tabacum HOM05D004522 ORTHO05D005887 1.2e-93 347.8 401 47.9
Nn4g23566 Nelumbo nucifera HOM05D004522 ORTHO05D005887 1.6e-93 347.4 395 49.1
Sopen02g026540 Solanum pennellii HOM05D004522 ORTHO05D005887 2.1e-93 347.1 430 46.5
vmacro20064 Vaccinium macrocarpon HOM05D004522 ORTHO05D005887 2.1e-93 347.1 404 47.8
Oeu005158.2 Olea europaea HOM05D004522 ORTHO05D005887 3.6e-93 346.3 436 45.9
RhsimUnG0118700 Rhododendron simsii HOM05D004522 ORTHO05D005887 3.6e-93 346.3 449 45.4
Solyc02g081910.2 Solanum lycopersicum HOM05D004522 ORTHO05D005887 3.6e-93 346.3 430 46.5
CAN.G809.41 Capsicum annuum HOM05D004522 ORTHO05D005887 1.8e-92 344.0 429 46.4
DCAR_006332 Daucus carota HOM05D004522 ORTHO05D005887 3.1e-92 343.2 402 47.3
HanXRQChr16g0521121 Helianthus annuus HOM05D004522 ORTHO05D005887 3.1e-92 343.2 391 49.1
PSO063G2748 Papaver somniferum HOM05D004522 ORTHO05D005887 6.8e-92 342.0 398 48.0
PSO782G1701 Papaver somniferum HOM05D004522 ORTHO05D005887 8.9e-92 341.7 398 48.0
Aqoxy3G03771 Aquilegia oxysepala HOM05D004522 ORTHO05D005887 1.2e-91 341.3 394 47.7
CsaV3_3G047220 Cucumis sativus L. HOM05D004522 ORTHO05D005887 2.0e-91 340.5 408 47.5
MELO3C003609.2 Cucumis melo HOM05D004522 ORTHO05D005887 5.8e-91 339.0 395 47.6
AUR62028071 Chenopodium quinoa HOM05D004522 ORTHO05D005887 1.7e-90 337.4 398 46.7
Peaxi162Scf00036g01311 Petunia axillaris HOM05D004522 ORTHO05D005887 1.7e-90 337.4 432 46.1
Lsat_1_v5_gn_4_39420 Lactuca sativa HOM05D004522 ORTHO05D005887 1.1e-89 334.7 390 47.2
ATR0691G178 Amborella trichopoda HOM05D004522 ORTHO05D005887 5.4e-89 332.4 389 48.6
Os06g0281400 Oryza sativa ssp. japonica HOM05D004522 ORTHO05D005887 1.2e-88 331.3 423 45.6
Zm00001eb280820 Zea mays HOM05D004522 ORTHO05D005887 6.0e-88 328.9 398 46.2
HPP92_015554 Vanilla planifolia HOM05D004522 ORTHO05D005887 1.7e-87 327.4 391 46.5
unitig_60.g25825 Utricularia gibba HOM05D004522 ORTHO05D005887 1.5e-86 324.3 390 46.2
PSO478G3803 Papaver somniferum HOM05D004522 ORTHO05D005887 7.1e-81 305.4 427 42.2
Pp3c24_9990 Physcomitrium patens HOM05D004522 ORTHO05D005887 6.0e-80 302.4 380 43.7
AUR62043895 Chenopodium quinoa HOM05D004522 ORTHO05D005887 6.6e-79 298.9 349 47.3
Pp3c23_11430 Physcomitrium patens HOM05D004522 ORTHO05D005887 2.0e-75 287.3 402 41.5
Migut.E00600 Erythranthe guttata HOM05D004522 ORTHO05D005887 4.5e-75 286.2 407 43.5
Mapoly0025s0095 Marchantia polymorpha HOM05D004522 ORTHO05D005887 4.9e-74 282.7 395 42.0
VMungo0251G2783 Vigna mungo HOM05D004522 ORTHO05D005887 2.1e-72 277.3 223 61.9
AagrBONN_evm.TU.Sc2ySwM_228.692 Anthoceros agrestis HOM05D004522 ORTHO05D005887 2.1e-69 267.3 385 41.0
SMO304G0055 Selaginella moellendorffii HOM05D004522 ORTHO05D005887 1.5e-67 261.2 383 40.5
Medtr2g066840 Medicago truncatula HOM05D004522 ORTHO05D005887 9.6e-62 241.9 399 37.1
Actinidia32106 Actinidia chinensis HOM05D004522 ORTHO05D005887 1.3e-61 241.5 286 49.0
Zm00001eb380580 Zea mays HOM05D004522 ORTHO05D005887 6.3e-53 212.6 200 53.5
MCO16G139 Micromonas commoda HOM05D004522 ORTHO05D005887 1.4e-49 201.4 410 34.4
Cre10.g442850 Chlamydomonas reinhardtii HOM05D004522 ORTHO05D005887 1.9e-49 201.1 406 33.5
PGSC0003DMG400012781 Solanum tuberosum HOM05D004522 ORTHO05D005887 1.9e-49 201.1 320 38.1
CBR_g22953 Chara braunii HOM05D004522 ORTHO05D005887 5.1e-47 193.0 451 32.2
PRCOL_00000349 Prasinoderma coloniale HOM05D004522 ORTHO05D005887 1.1e-38 165.2 398 32.2
VMungo0251G2915 Vigna mungo HOM05D004522 ORTHO05D005887 2.6e-30 137.5 109 63.3
Hma1.2p1_0534F.1_g173700 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 2.2e-29 134.4 95 68.4
Hma1.2p1_1265F.1_g271356 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 2.2e-29 134.4 95 68.4
TPR.G15425 Trifolium pratense HOM05D004522 ORTHO05D005887 4.1e-28 130.2 117 58.1
Cfa022087 Carpinus fangiana HOM05D002182 ORTHO05D004671 2.8e-08 64.3 230 26.5
MD04G1023600 Malus domestica HOM05D002182 ORTHO05D008382 1.0e-07 62.4 237 26.6
Prupe.1G173400 Prunus persica HOM05D002182 ORTHO05D008382 1.4e-07 62.0 237 25.7
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 1.8e-07 61.6 242 28.1
CDE05G0942 Ceratophyllum demersum HOM05D002182 ORTHO05D008382 3.0e-07 60.8 237 26.2
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 8.9e-07 59.3 240 25.8
RcHm_v2.0_Chr4g0412031 Rosa chinensis HOM05D002182 ORTHO05D008382 2.0e-06 58.2 237 24.5
FvH4_4g12750 Fragaria vesca HOM05D002182 ORTHO05D008382 5.7e-06 56.6 237 24.5
FAN22G0833 Fragaria x ananassa HOM05D002182 ORTHO05D008382 5.7e-06 56.6 237 24.5
FAN12G0184 Fragaria x ananassa HOM05D002182 ORTHO05D008382 9.8e-06 55.8 237 24.5
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 9.8e-06 55.8 239 26.4
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 9.8e-06 55.8 240 26.7


User provided reference genes

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