Gene: AT4G31210

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G31210
  • Transcript Identifier AT4G31210.1
  • Gene Type Coding gene
  • Location Chr4 : 15165280-15172534 : positive

Gene Family Information

  • ID HOM05D004522
  • #Genes/#Species 159/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G31210.1
  • uniprot F4JRX3

Descriptions

  • Description DNA topoisomerase, type IA, core
  • Computational description DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, zn finger (InterPro:IPR013498), DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), DNA topoisomerase I, bacterial-type (InterPro:IPR005733), Toprim domain, subgroup (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), Toprim domain (InterPro:IPR006171); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 21441 Blast hits to 18441 proteins in 2923 species: Archae - 440; Bacteria - 10015; Metazoa - 1777; Fungi - 750; Plants - 256; Viruses - 35; Other Eukaryotes - 8168 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IEA
Gene OntologyDNA topological change
GO:0006265
IEA
InterProDNA topological change

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003917
IEA
Gene OntologyDNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0003917
IEA
InterProDNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0003729
IDA
Gene OntologymRNA binding1
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003916
IEA
GOA DatabaseDNA topoisomerase activity
GO:0003916
IEA
InterProDNA topoisomerase activity
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
Gene Ontologychromosome
GO:0005694
IEA
InterProchromosome
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013498 DNA topoisomerase, type IA, zn finger
IPR003602 DNA topoisomerase, type IA, DNA-binding domain
IPR034149 DNA topoisomerase 1, TOPRIM domain
IPR000380 DNA topoisomerase, type IA
IPR006171 TOPRIM domain
IPR013826 DNA topoisomerase, type IA, central region, subdomain 3
IPR013497 DNA topoisomerase, type IA, central
IPR005733 DNA topoisomerase I, bacterial-type
IPR003601 DNA topoisomerase, type IA, domain 2
IPR013825 DNA topoisomerase, type IA, central region, subdomain 2
IPR025589 Topoisomerase C-terminal repeat
IPR013824 DNA topoisomerase, type IA, central region, subdomain 1
IPR023405 DNA topoisomerase, type IA, core domain
Mapman id Description
13.5.4 Cell cycle organisation.organellar DNA replication.type-Ia DNA topoisomerase