Gene: Sopen02g026540

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g026540
  • Transcript Identifier Sopen02g026540.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 49439080-49450804 : negative

Gene Family Information

  • ID HOM05D004522
  • #Genes/#Species 159/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g026540.1

Descriptions

  • Description DNA topoisomerase, type IA, core | FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding | INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process | LOCATED IN: chromosome | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, zn finger , DNA topoisomerase, type IA, core , DNA topoisomerase, type IA, DNA-binding , DNA topoisomerase, type IA, domain 2 , DNA topoisomerase, type IA, central , DNA topoisomerase, type IA, central region, subdomain 3 , DNA topoisomerase I, bacterial-type , Toprim domain, subgroup , DNA topoisomerase, type IA, central region, subdomain 1 , Toprim domain | BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IEA
InterProDNA topological change

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003916
IEA
InterProDNA topoisomerase activity
GO:0003917
IEA
InterProDNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G31210

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
InterProchromosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR025589 Topoisomerase C-terminal repeat
IPR013497 DNA topoisomerase, type IA, central
IPR005733 DNA topoisomerase I, bacterial-type
IPR003602 DNA topoisomerase, type IA, DNA-binding domain
IPR023405 DNA topoisomerase, type IA, core domain
IPR013826 DNA topoisomerase, type IA, central region, subdomain 3
IPR006171 TOPRIM domain
IPR034149 DNA topoisomerase 1, TOPRIM domain
IPR013824 DNA topoisomerase, type IA, central region, subdomain 1
IPR003601 DNA topoisomerase, type IA, domain 2
IPR013498 DNA topoisomerase, type IA, zn finger
IPR013825 DNA topoisomerase, type IA, central region, subdomain 2
IPR000380 DNA topoisomerase, type IA
Mapman id Description
13.5.4 Cell cycle organisation.organellar DNA replication.type-Ia DNA topoisomerase