Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18890 Sapria himalayana HOM05D001061 ORTHO05D006881 1.1e-71 273.1 134 100.0
SHI03645 Sapria himalayana HOM05D012376 ORTHO05D006507 2.3e-16 89.4 57 75.4
Prupe.5G217300 Prunus persica HOM05D001061 ORTHO05D006881 1.1e-13 80.5 39 94.9
Hund09999 Selenicereus undatus HOM05D001061 ORTHO05D006881 1.1e-13 80.5 39 94.9
Sc10g0009570 Simmondsia chinensis HOM05D001061 ORTHO05D006881 1.1e-13 80.5 39 94.9
EL10Ac5g11250 Beta vulgaris HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
COL.COLO4_22718 Corchorus olitorius HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
Dinv36905 Davidia involucrata HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
ECA246G2868 Erigeron canadensis HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
Lj5C145G2 Lonicera japonica HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
Lj4g0007114 Lotus japonicus HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
Lalb_Chr13g0302331 Lupinus albus HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
Phvul.003G177100 Phaseolus vulgaris HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
QL10p022714 Quercus lobata HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
Rhsim08G0137000 Rhododendron simsii HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
SHI05153 Sapria himalayana HOM05D006273 ORTHO05D007607 1.4e-13 80.1 75 61.3
TAR622G0276 Trochodendron aralioides HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
vmacro17676 Vaccinium macrocarpon HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
VMungo1215G1249 Vigna mungo HOM05D001061 ORTHO05D006881 1.4e-13 80.1 39 92.3
Ca_02537_v3 Cicer arietinum L. HOM05D001061 ORTHO05D006881 1.9e-13 79.7 39 89.7
SHI37023 Sapria himalayana HOM05D000846 ORTHO05D006755 1.9e-13 79.7 53 71.7
Haze_18615 Corylus avellana HOM05D001061 ORTHO05D006881 2.4e-13 79.3 39 89.7
ATR0681G268 Amborella trichopoda HOM05D001061 ORTHO05D006881 3.2e-13 79.0 39 89.7
Ciclev10018746m.g Citrus clementina HOM05D001061 ORTHO05D006881 3.2e-13 79.0 39 89.7
HanXRQChr05g0153891 Helianthus annuus HOM05D001061 ORTHO05D006881 3.2e-13 79.0 39 89.7
Manes.01G020600 Manihot esculenta HOM05D001061 ORTHO05D006881 3.2e-13 79.0 39 89.7
Potri.012G060000 Populus trichocarpa HOM05D001061 ORTHO05D006881 3.2e-13 79.0 39 89.7
Sabra12G0043000 Salix brachista HOM05D001061 ORTHO05D006881 3.2e-13 79.0 39 89.7
TWI15G0827 Tripterygium wilfordii HOM05D001061 ORTHO05D006881 3.2e-13 79.0 39 89.7
GSVIVG01008235001 Vitis vinifera HOM05D001061 ORTHO05D006881 3.2e-13 79.0 39 89.7
Aqoxy3G03903 Aquilegia oxysepala HOM05D001061 ORTHO05D006881 4.1e-13 78.6 38 92.1
Cc04_g07520 Coffea canephora HOM05D001061 ORTHO05D006881 4.1e-13 78.6 39 87.2
Duzib205G1584 Durio zibethinus HOM05D001061 ORTHO05D006881 4.1e-13 78.6 39 89.7
Hma1.2p1_0340F.1_g129890 Hydrangea macrophylla HOM05D001061 ORTHO05D006881 4.1e-13 78.6 39 89.7
Lsat_1_v5_gn_5_25080 Lactuca sativa HOM05D001061 ORTHO05D006881 4.1e-13 78.6 39 92.3
Os05g0274200 Oryza sativa ssp. japonica HOM05D001061 ORTHO05D006881 4.1e-13 78.6 39 87.2
Thecc.03G028100 Theobroma cacao HOM05D001061 ORTHO05D006881 4.1e-13 78.6 39 89.7
MSTRG.11316 Avicennia marina HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
ClCG06G015030 Citrullus lanatus HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
MELO3C017287.2 Cucumis melo HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
CsaV3_1G003630 Cucumis sativus L. HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
Eucgr.B00700 Eucalyptus grandis HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
FvH4_5g12700 Fragaria vesca HOM05D001061 ORTHO05D006881 5.4e-13 78.2 43 86.0
Glyma.17G121400 Glycine max HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
Medtr4g111945 Medicago truncatula HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
Psat4g043480 Pisum sativum HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
PGR083G2045 Punica granatum HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
Sed0003655 Sechium edule HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
SGA_v2.0_scaffold19G08803 Striga asiatica HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
TPR.G26764 Trifolium pratense HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 89.7
Zm00001eb326520 Zea mays HOM05D001061 ORTHO05D006881 5.4e-13 78.2 39 87.2
Atru.chr9.755 Acer truncatum HOM05D001061 ORTHO05D006881 7.1e-13 77.8 39 87.2
CSS0050177 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D006881 7.1e-13 77.8 39 89.7
AUR62032190 Chenopodium quinoa HOM05D001061 ORTHO05D006881 7.1e-13 77.8 39 87.2
AUR62036955 Chenopodium quinoa HOM05D001061 ORTHO05D006881 7.1e-13 77.8 39 87.2
Thhalv10020006m.g Eutrema salsugineum HOM05D001061 ORTHO05D006881 7.1e-13 77.8 39 89.7
SHI08332 Sapria himalayana HOM05D001905 ORTHO05D001820 7.1e-13 77.8 57 70.2
HPP92_018512 Vanilla planifolia HOM05D001061 ORTHO05D006881 7.1e-13 77.8 39 87.2
BcaB04g18987 Brassica carinata HOM05D001061 ORTHO05D006881 9.2e-13 77.4 39 87.2
BcaC01g03695 Brassica carinata HOM05D001061 ORTHO05D006881 9.2e-13 77.4 39 87.2
BcaC08g43436 Brassica carinata HOM05D001061 ORTHO05D006881 9.2e-13 77.4 42 81.0
A03p40700 Brassica napus HOM05D001061 ORTHO05D006881 9.2e-13 77.4 39 87.2
C03p49490 Brassica napus HOM05D001061 ORTHO05D006881 9.2e-13 77.4 39 87.2
BolC3t17247H Brassica oleracea HOM05D001061 ORTHO05D006881 9.2e-13 77.4 39 87.2
BolC6t35887H Brassica oleracea HOM05D001061 ORTHO05D006881 9.2e-13 77.4 42 81.0
BraA03t13227Z Brassica rapa HOM05D001061 ORTHO05D006881 9.2e-13 77.4 39 87.2
CAN.G587.78 Capsicum annuum HOM05D001061 ORTHO05D006881 9.2e-13 77.4 39 89.7
SHI17237 Sapria himalayana HOM05D000139 ORTHO05D000103 9.2e-13 77.4 76 56.6
Solyc06g069230.3 Solanum lycopersicum HOM05D001061 ORTHO05D006881 9.2e-13 77.4 42 83.3
Sopen06g026490 Solanum pennellii HOM05D001061 ORTHO05D006881 9.2e-13 77.4 42 83.3
PGSC0003DMG400004071 Solanum tuberosum HOM05D001061 ORTHO05D006881 9.2e-13 77.4 42 83.3
Mapoly0120s0004 Marchantia polymorpha HOM05D001061 ORTHO05D006881 1.2e-12 77.0 39 84.6
Nitab4.5_0001432g0030 Nicotiana tabacum HOM05D001061 ORTHO05D006881 1.2e-12 77.0 39 87.2
Nitab4.5_0008699g0020 Nicotiana tabacum HOM05D001061 ORTHO05D006881 1.2e-12 77.0 39 87.2
AL3G31850 Arabidopsis lyrata HOM05D001061 ORTHO05D006881 1.6e-12 76.6 39 89.7
AT3G18524 Arabidopsis thaliana HOM05D001061 ORTHO05D006881 1.6e-12 76.6 39 89.7
Carub.0003s1832 Capsella rubella HOM05D001061 ORTHO05D006881 1.6e-12 76.6 39 89.7
CARHR093910 Cardamine hirsuta HOM05D001061 ORTHO05D006881 1.6e-12 76.6 39 89.7
Gohir.A09G046500 Gossypium hirsutum HOM05D001061 ORTHO05D006881 1.6e-12 76.6 39 87.2
Gohir.D09G046800 Gossypium hirsutum HOM05D001061 ORTHO05D006881 1.6e-12 76.6 39 87.2
Gorai.006G063300 Gossypium raimondii HOM05D001061 ORTHO05D006881 1.6e-12 76.6 39 87.2
Peaxi162Scf00013g00939 Petunia axillaris HOM05D001061 ORTHO05D006881 1.6e-12 76.6 39 89.7
Sp3g16620 Schrenkiella parvula HOM05D001061 ORTHO05D006881 1.6e-12 76.6 39 87.2
unitig_61.g26195 Utricularia gibba HOM05D001061 ORTHO05D006881 1.6e-12 76.6 38 86.8
Actinidia31031 Actinidia chinensis HOM05D001061 ORTHO05D006881 2.1e-12 76.3 39 87.2
Aa31LG8G5400 Aethionema arabicum HOM05D001061 ORTHO05D006881 2.1e-12 76.3 39 87.2
arahy.Tifrunner.gnm1.ann1.ERX1RE Arachis hypogaea HOM05D001061 ORTHO05D006881 2.1e-12 76.3 39 87.2
arahy.Tifrunner.gnm1.ann1.J2PRY0 Arachis hypogaea HOM05D001061 ORTHO05D006881 2.1e-12 76.3 39 87.2
CiPaw.15G126900 Carya illinoinensis HOM05D001061 ORTHO05D006881 2.1e-12 76.3 39 87.2
Migut.I00396 Erythranthe guttata HOM05D001061 ORTHO05D006881 2.1e-12 76.3 39 89.7
MD06G1211200 Malus domestica HOM05D001061 ORTHO05D006881 2.1e-12 76.3 39 87.2
Nn4g23718 Nelumbo nucifera HOM05D001061 ORTHO05D006881 2.1e-12 76.3 39 87.2
CANSAT80G1355 Cannabis sativa HOM05D001061 ORTHO05D006881 2.7e-12 75.9 39 84.6
PSO063G4650 Papaver somniferum HOM05D001061 ORTHO05D006881 2.7e-12 75.9 39 84.6
PSO782G4375 Papaver somniferum HOM05D001061 ORTHO05D006881 2.7e-12 75.9 39 84.6
SHI15282 Sapria himalayana HOM05D012376 ORTHO05D006881 2.7e-12 75.9 59 67.8
C06p08040 Brassica napus HOM05D001061 ORTHO05D006881 3.5e-12 75.5 43 79.1
FAN08G1716 Fragaria x ananassa HOM05D001061 ORTHO05D006881 3.5e-12 75.5 39 89.7
FAN13G0485 Fragaria x ananassa HOM05D002339 ORTHO05D006881 3.5e-12 75.5 39 89.7
FAN18G1105 Fragaria x ananassa HOM05D001061 ORTHO05D006881 3.5e-12 75.5 39 89.7
FAN18G1805 Fragaria x ananassa HOM05D001061 ORTHO05D006881 3.5e-12 75.5 39 89.7
Pp3c22_850 Physcomitrium patens HOM05D001061 ORTHO05D006881 4.6e-12 75.1 39 82.1
Lalb_Chr12g0197571 Lupinus albus HOM05D001061 ORTHO05D006881 6.0e-12 74.7 39 87.2
MD14G1221900 Malus domestica HOM05D001061 ORTHO05D006881 6.0e-12 74.7 39 84.6
RcHm_v2.0_Chr7g0184631 Rosa chinensis HOM05D001061 ORTHO05D006881 7.8e-12 74.3 39 87.2
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 7.8e-12 74.3 74 56.8
BcaC08g42864 Brassica carinata HOM05D001061 ORTHO05D006881 1.0e-11 73.9 67 59.7
DCAR_023182 Daucus carota HOM05D001061 ORTHO05D006881 1.0e-11 73.9 39 79.5
AagrBONN_evm.TU.Sc2ySwM_344.1255 Anthoceros agrestis HOM05D001061 ORTHO05D006881 1.3e-11 73.6 39 79.5
SMO347G0538 Selaginella moellendorffii HOM05D001061 ORTHO05D006881 1.7e-11 73.2 39 82.1
SHI27519 Sapria himalayana HOM05D004808 ORTHO05D005279 3.0e-11 72.4 59 62.7
CBR_g24047 Chara braunii HOM05D001061 ORTHO05D006881 3.3e-10 68.9 39 79.5
SHI04115 Sapria himalayana HOM05D000512 ORTHO05D000861 3.3e-10 68.9 37 86.5
SHI23047 Sapria himalayana HOM05D012376 ORTHO05D003975 3.3e-10 68.9 50 70.0
SHI49358 Sapria himalayana HOM05D000518 ORTHO05D001974 1.2e-09 67.0 58 62.1
SMO347G0055 Selaginella moellendorffii HOM05D001061 ORTHO05D006881 1.2e-09 67.0 39 74.4
SHI05595 Sapria himalayana HOM05D001544 ORTHO05D002732 4.7e-09 65.1 51 64.7
SHI26680 Sapria himalayana HOM05D000002 ORTHO05D000001 4.7e-09 65.1 53 66.0
SHI27159 Sapria himalayana HOM05D000002 ORTHO05D000001 4.7e-09 65.1 73 53.4
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 6.2e-09 64.7 66 51.5
PRCOL_00002085 Prasinoderma coloniale HOM05D001061 ORTHO05D006881 8.1e-09 64.3 39 71.8
SHI18801 Sapria himalayana HOM05D000805 ORTHO05D000624 1.4e-08 63.5 48 64.6
SHI08665 Sapria himalayana HOM05D000004 ORTHO05D009727 1.8e-08 63.2 75 52.0
SHI23379 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-08 63.2 60 58.3
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 3.1e-08 62.4 95 43.2
SHI20108 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-08 62.0 51 68.6
SHI22361 Sapria himalayana HOM05D005583 ORTHO05D006507 4.0e-08 62.0 55 60.0
SHI02583 Sapria himalayana HOM05D008681 ORTHO05D006881 6.8e-08 61.2 60 58.3
SHI06747 Sapria himalayana HOM05D012376 ORTHO05D006507 8.9e-08 60.8 73 47.9
MCO01G314 Micromonas commoda HOM05D001061 ORTHO05D006881 1.5e-07 60.1 39 66.7
SHI04515 Sapria himalayana HOM05D012376 ORTHO05D002750 1.5e-07 60.1 58 55.2
SHI21104 Sapria himalayana HOM05D001130 ORTHO05D001052 1.5e-07 60.1 49 65.3
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 3.4e-07 58.9 76 52.6
SHI26413 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-07 58.5 76 46.1
SMO347G0174 Selaginella moellendorffii HOM05D001061 ORTHO05D006881 4.4e-07 58.5 34 73.5
SHI26606 Sapria himalayana HOM05D002759 ORTHO05D003290 9.9e-07 57.4 57 56.1
SHI11774 Sapria himalayana HOM05D012376 ORTHO05D006507 1.3e-06 57.0 73 50.7
SHI16653 Sapria himalayana HOM05D012376 ORTHO05D009727 1.3e-06 57.0 77 50.6
SHI20242 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-06 56.6 73 52.1
SHI11405 Sapria himalayana HOM05D004750 ORTHO05D005598 2.9e-06 55.8 60 53.3
SHI31132 Sapria himalayana HOM05D012376 ORTHO05D006881 2.9e-06 55.8 39 69.2
Cre01.g003463 Chlamydomonas reinhardtii HOM05D001061 ORTHO05D006881 3.8e-06 55.5 38 65.8
PGSC0003DMG400008417 Solanum tuberosum HOM05D001061 ORTHO05D006881 3.8e-06 55.5 36 75.0
SHI07507 Sapria himalayana HOM05D001115 ORTHO05D001023 4.9e-06 55.1 45 64.4
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 4.9e-06 55.1 58 51.7
SHI08441 Sapria himalayana HOM05D012376 ORTHO05D003290 6.4e-06 54.7 48 60.4
SHI33201 Sapria himalayana HOM05D000175 ORTHO05D004574 6.4e-06 54.7 51 58.8
SHI03833 Sapria himalayana HOM05D000002 ORTHO05D000001 8.4e-06 54.3 98 39.8


User provided reference genes

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