Gene: Potri.012G060000
General Information
Structural Information
- Species Populus trichocarpa
- Gene Identifier Potri.012G060000
- Transcript Identifier Potri.012G060000.2
- Gene Type Coding gene
- Location Chr12 : 6041804-6049796 : positive
Gene Family Information
- ID HOM05D001061
- #Genes/#Species 575/100
- Phylogenetic origin
- ID ORTHO05D006881
- #Genes/#Species 137/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Potri.012G060000.v4.1
- pacid 42784357
- synonym eugene3.00120511
Descriptions
- Description K08735 - DNA mismatch repair protein MSH2 (MSH2)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006298 | IEA | InterPro | mismatch repair | |
| GO:0006290 | ISO | PLAZA Integrative Orthology | pyrimidine dimer repair | AT3G18524 |
| GO:0045128 | ISO | PLAZA Integrative Orthology | negative regulation of reciprocal meiotic recombination | AT3G18524 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0030983 | IEA | InterPro | mismatched DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G18524 |
| GO:0003684 | ISO | PLAZA Integrative Orthology | damaged DNA binding | AT3G18524 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032300 | IEA | InterPro | mismatch repair complex | |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT3G18524 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000432 | DNA mismatch repair protein MutS, C-terminal |
| IPR016151 | DNA mismatch repair protein MutS, N-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR007696 | DNA mismatch repair protein MutS, core |
| IPR036678 | MutS, connector domain superfamily |
| IPR045076 | DNA mismatch repair MutS family |
| IPR007695 | DNA mismatch repair protein MutS-like, N-terminal |
| IPR007860 | DNA mismatch repair protein MutS, connector domain |
| IPR011184 | DNA mismatch repair Msh2-type |
| IPR036187 | DNA mismatch repair protein MutS, core domain superfamily |
| IPR007861 | DNA mismatch repair protein MutS, clamp |
| IPR032642 | DNA mismatch repair protein Msh2 |
| Mapman id | Description |
|---|---|
| 14.7.1.1 | DNA damage response.mismatch repair (MMR).MSH2-x mismatch repair heterodimer components.component MSH2 |