Gene: Solyc06g069230.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g069230.3
  • Transcript Identifier Solyc06g069230.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 40621719-40628753 : negative

Gene Family Information

  • ID HOM05D001061
  • #Genes/#Species 575/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g069230.3.1
  • uniprot A0A3Q7H0I8
  • gene_id Solyc06g069230

Descriptions

  • Description DNA mismatch repair protein MutS (AHRD V3.3 *** A0A200Q8J6_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006310
IBA
GOA DatabaseDNA recombination
GO:0006301
IBA
GOA Databasepostreplication repair
GO:0006298
IBA
IEA
GOA Databasemismatch repair
GO:0006298
IEA
InterPromismatch repair
GO:0045910
IBA
GOA Databasenegative regulation of DNA recombination
GO:0043570
IBA
GOA Databasemaintenance of DNA repeat elements
GO:0006290
ISO
PLAZA Integrative Orthologypyrimidine dimer repair AT3G18524
GO:0045128
ISO
PLAZA Integrative Orthologynegative regulation of reciprocal meiotic recombination AT3G18524
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032405
IBA
GOA DatabaseMutLalpha complex binding
GO:0008094
IBA
GOA DatabaseATPase, acting on DNA
GO:0030983
IBA
IEA
GOA Databasemismatched DNA binding
GO:0030983
IEA
InterPromismatched DNA binding
GO:0000400
IBA
GOA Databasefour-way junction DNA binding
GO:0000406
IBA
GOA Databasedouble-strand/single-strand DNA junction binding
GO:0032357
IBA
GOA Databaseoxidized purine DNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G18524
GO:0003684
ISO
PLAZA Integrative Orthologydamaged DNA binding AT3G18524
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0032137
IBA
GOA Databaseguanine/thymine mispair binding
GO:0032142
IBA
GOA Databasesingle guanine insertion binding
GO:0032143
IBA
GOA Databasesingle thymine insertion binding
GO:0032181
IBA
GOA Databasedinucleotide repeat insertion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032301
IBA
GOA DatabaseMutSalpha complex
GO:0032300
IBA
IEA
GOA Databasemismatch repair complex
GO:0032300
IEA
InterPromismatch repair complex
GO:0032302
IBA
GOA DatabaseMutSbeta complex
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT3G18524
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016151 DNA mismatch repair protein MutS, N-terminal
IPR036678 MutS, connector domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR007695 DNA mismatch repair protein MutS-like, N-terminal
IPR045076 DNA mismatch repair MutS family
IPR007860 DNA mismatch repair protein MutS, connector domain
IPR011184 DNA mismatch repair Msh2-type
IPR007696 DNA mismatch repair protein MutS, core
IPR000432 DNA mismatch repair protein MutS, C-terminal
IPR032642 DNA mismatch repair protein Msh2
IPR036187 DNA mismatch repair protein MutS, core domain superfamily
IPR007861 DNA mismatch repair protein MutS, clamp
Mapman id Description
14.7.1.1 DNA damage response.mismatch repair (MMR).MSH2-x mismatch repair heterodimer components.component MSH2