Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 1.1e-179 633.3 353 100.0
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 2.7e-88 329.7 380 57.4
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 1.9e-86 323.6 395 53.9
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 4.3e-86 322.4 381 56.2
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 1.1e-84 317.8 384 54.7
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 2.0e-83 313.5 388 55.4
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 2.6e-83 313.2 380 52.9
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 3.4e-83 312.8 380 52.9
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 1.0e-82 311.2 383 55.4
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 8.5e-82 308.1 385 56.4
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 8.5e-82 308.1 384 53.4
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 1.4e-81 307.4 385 55.8
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 4.2e-81 305.8 379 57.5
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 9.4e-81 304.7 378 58.5
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 1.2e-80 304.3 384 56.8
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 2.7e-80 303.1 387 51.4
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 3.6e-80 302.8 384 53.6
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 7.9e-80 301.6 381 55.4
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 7.9e-80 301.6 376 52.4
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 1.0e-79 301.2 382 50.5
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 1.8e-79 300.4 370 56.2
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 3.0e-79 299.7 382 57.1
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 3.9e-79 299.3 382 52.1
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 5.1e-79 298.9 382 51.0
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 5.1e-79 298.9 383 57.2
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 6.7e-79 298.5 340 54.7
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 8.8e-79 298.1 384 51.8
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 8.8e-79 298.1 383 57.4
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 1.1e-78 297.7 375 53.3
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 1.5e-78 297.4 383 53.3
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 1.5e-78 297.4 385 49.6
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 1.5e-78 297.4 385 49.6
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 2.0e-78 297.0 375 51.2
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 2.6e-78 296.6 381 54.3
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 2.6e-78 296.6 382 57.3
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 4.4e-78 295.8 385 53.8
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 9.7e-78 294.7 385 51.4
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 3.7e-77 292.7 384 56.0
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 4.8e-77 292.4 381 53.3
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 4.8e-77 292.4 387 52.5
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 4.8e-77 292.4 387 52.5
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 6.3e-77 292.0 385 53.0
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 1.8e-76 290.4 382 53.4
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 1.8e-76 290.4 380 54.7
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.8e-76 290.4 386 54.9
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 3.1e-76 289.7 328 57.6
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 6.9e-76 288.5 376 52.9
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 9.1e-76 288.1 349 54.7
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 1.5e-75 287.3 388 51.8
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 1.5e-75 287.3 376 54.8
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 2.0e-75 287.0 392 50.8
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 2.6e-75 286.6 387 55.3
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 3.4e-75 286.2 424 50.0
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 3.4e-75 286.2 388 49.2
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 5.9e-75 285.4 396 48.7
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 7.7e-75 285.0 389 48.6
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.2e-74 283.5 383 51.2
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 2.2e-74 283.5 372 55.6
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 2.2e-74 283.5 389 49.1
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 2.9e-74 283.1 383 50.7
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 2.9e-74 283.1 385 49.9
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 2.9e-74 283.1 391 52.9
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 2.9e-74 283.1 384 53.9
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 5.0e-74 282.3 379 52.5
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 5.0e-74 282.3 379 53.3
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 2.5e-73 280.0 388 52.1
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 2.5e-73 280.0 389 49.6
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.2e-73 279.6 387 51.4
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 4.2e-73 279.3 378 51.3
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 7.2e-73 278.5 380 53.7
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.2e-72 277.7 366 53.8
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 1.6e-72 277.3 368 55.7
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 2.7e-72 276.6 389 53.2
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 4.7e-72 275.8 326 55.8
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 6.1e-72 275.4 386 51.6
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 1.0e-71 274.6 382 51.8
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 1.4e-71 274.2 381 52.2
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 1.8e-71 273.9 386 54.7
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 6.7e-71 271.9 387 51.4
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 6.7e-71 271.9 328 55.8
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 2.2e-69 266.9 374 48.9
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 1.4e-68 264.2 382 51.6
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 3.1e-68 263.1 383 50.9
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 7.0e-68 261.9 391 46.8
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 3.5e-67 259.6 345 50.7
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 5.9e-67 258.8 387 47.5
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 3.8e-66 256.1 387 47.0
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.8e-66 256.1 371 51.2
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.0e-66 255.8 371 51.8
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 8.5e-66 255.0 387 47.3
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 1.9e-65 253.8 365 50.4
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 1.6e-64 250.8 381 49.6
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 1.8e-63 247.3 380 48.9
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 1.8e-63 247.3 386 45.6
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 3.3e-62 243.0 384 46.1
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 4.4e-62 242.7 389 42.2
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 1.7e-61 240.7 377 47.7
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.4e-60 237.7 373 43.4
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 2.4e-60 236.9 374 47.1
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 4.1e-60 236.1 335 53.1
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 9.1e-60 235.0 367 46.0
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 1.6e-59 234.2 372 48.1
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 3.2e-57 226.5 367 45.5
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 9.4e-57 224.9 309 50.8
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 4.7e-56 222.6 397 44.1
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 1.8e-55 220.7 421 38.2
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 9.8e-54 214.9 242 63.2
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.4e-52 211.1 363 45.5
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 1.9e-49 200.7 416 40.4
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 5.5e-49 199.1 354 44.1
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 4.5e-43 179.5 303 38.9
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 6.8e-39 165.6 290 47.9
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 7.5e-38 162.2 340 38.5
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 1.1e-31 141.7 303 34.3
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 1.4e-20 104.8 208 44.7
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.4e-20 104.0 157 44.6
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 3.0e-18 97.1 102 57.8
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 5.1e-18 96.3 48 91.7
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.5e-17 94.7 48 89.6
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 1.9e-17 94.4 48 87.5
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 4.3e-17 93.2 48 89.6
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 5.6e-17 92.8 49 85.7
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.3e-13 81.6 105 54.3
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 2.9e-13 80.5 43 88.4
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 4.1e-12 76.6 76 48.7
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 9.2e-12 75.5 110 45.5
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 4.4e-06 56.6 207 30.9
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 5.8e-06 56.2 47 61.7


User provided reference genes

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