Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10394 Sapria himalayana HOM05D002159 ORTHO05D005625 1.9e-67 259.2 149 100.0
Manes.01G126800 Manihot esculenta HOM05D002159 ORTHO05D005625 4.6e-21 105.1 69 73.9
Duzib084G0847 Durio zibethinus HOM05D002159 ORTHO05D005625 1.0e-20 104.0 69 73.9
Thecc.03G179100 Theobroma cacao HOM05D002159 ORTHO05D005625 1.3e-20 103.6 69 73.9
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 1.7e-20 103.2 69 73.9
Ciclev10004414m.g Citrus clementina HOM05D002159 ORTHO05D005625 3.0e-20 102.4 69 71.0
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 3.0e-20 102.4 69 69.6
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 3.0e-20 102.4 69 68.1
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 3.0e-20 102.4 69 71.0
Atru.chr1.430 Acer truncatum HOM05D002159 ORTHO05D005625 3.9e-20 102.1 69 71.0
VMungo0464G2116 Vigna mungo HOM05D002159 ORTHO05D005625 8.7e-20 100.9 69 69.6
GSVIVG01028919001 Vitis vinifera HOM05D002159 ORTHO05D005625 8.7e-20 100.9 69 68.1
EL10Ac3g05612 Beta vulgaris HOM05D002159 ORTHO05D005625 1.1e-19 100.5 69 68.1
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 1.1e-19 100.5 69 66.7
COL.COLO4_28056 Corchorus olitorius HOM05D002159 ORTHO05D005625 1.1e-19 100.5 69 69.6
Lj8C239G4 Lonicera japonica HOM05D002159 ORTHO05D005625 1.1e-19 100.5 69 68.1
MD07G1272900 Malus domestica HOM05D002159 ORTHO05D005625 1.1e-19 100.5 69 71.0
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 1.5e-19 100.1 69 68.1
MELO3C006919.2 Cucumis melo HOM05D002159 ORTHO05D005625 1.5e-19 100.1 69 68.1
CsaV3_3G017220 Cucumis sativus L. HOM05D002159 ORTHO05D005625 1.5e-19 100.1 69 68.1
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 1.5e-19 100.1 69 69.6
Hma1.2p1_1604F.1_g293320 Hydrangea macrophylla HOM05D002159 ORTHO05D005625 1.5e-19 100.1 69 66.7
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 1.9e-19 99.8 69 68.1
THA.LOC104821393 Tarenaya hassleriana HOM05D002159 ORTHO05D005625 1.9e-19 99.8 69 69.6
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 2.5e-19 99.4 69 66.7
AUR62021167 Chenopodium quinoa HOM05D002159 ORTHO05D005625 2.5e-19 99.4 69 68.1
Haze_13669 Corylus avellana HOM05D002159 ORTHO05D005625 2.5e-19 99.4 69 66.7
DCAR_026334 Daucus carota HOM05D002159 ORTHO05D005625 2.5e-19 99.4 69 65.2
Rhsim03G0187300 Rhododendron simsii HOM05D002159 ORTHO05D005625 2.5e-19 99.4 69 69.6
SalBow2G1087 Salvia bowleyana HOM05D002159 ORTHO05D005625 2.5e-19 99.4 69 68.1
Ah.13g068620 Amaranthus hybridus HOM05D002159 ORTHO05D005625 3.3e-19 99.0 69 66.7
Aqoxy7G00327 Aquilegia oxysepala HOM05D002159 ORTHO05D005625 3.3e-19 99.0 69 66.7
Cpa.g.c26789.4 Carica papaya HOM05D002159 ORTHO05D005625 3.3e-19 99.0 69 69.6
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 4.3e-19 98.6 69 68.1
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 4.3e-19 98.6 69 65.2
Nn1g01521 Nelumbo nucifera HOM05D002159 ORTHO05D005625 4.3e-19 98.6 69 65.2
Potri.001G231800 Populus trichocarpa HOM05D002159 ORTHO05D005625 4.3e-19 98.6 69 69.6
Gohir.A12G256700 Gossypium hirsutum HOM05D002159 ORTHO05D005625 5.6e-19 98.2 69 68.1
Gohir.D12G258000 Gossypium hirsutum HOM05D002159 ORTHO05D005625 5.6e-19 98.2 69 68.1
Gorai.008G276300 Gossypium raimondii HOM05D002159 ORTHO05D005625 5.6e-19 98.2 69 68.1
Actinidia02884 Actinidia chinensis HOM05D002159 ORTHO05D005625 7.3e-19 97.8 69 66.7
Actinidia25881 Actinidia chinensis HOM05D002159 ORTHO05D005625 7.3e-19 97.8 69 66.7
Aa31LG11G3180 Aethionema arabicum HOM05D002159 ORTHO05D005625 7.3e-19 97.8 69 69.6
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 7.3e-19 97.8 69 66.7
ECA238G4262 Erigeron canadensis HOM05D002159 ORTHO05D005625 7.3e-19 97.8 69 68.1
HanXRQChr14g0462121 Helianthus annuus HOM05D002159 ORTHO05D005625 7.3e-19 97.8 69 66.7
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 9.6e-19 97.4 69 66.7
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 9.6e-19 97.4 69 66.7
Hund04761 Selenicereus undatus HOM05D002159 ORTHO05D005625 9.6e-19 97.4 69 65.2
TWI34G0379 Tripterygium wilfordii HOM05D002159 ORTHO05D005625 9.6e-19 97.4 69 69.6
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 1.3e-18 97.1 69 65.2
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 1.3e-18 97.1 69 66.7
Sabra16G0139100 Salix brachista HOM05D002159 ORTHO05D005625 1.3e-18 97.1 69 68.1
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 1.3e-18 97.1 69 65.2
TAR629G0581 Trochodendron aralioides HOM05D002159 ORTHO05D005625 1.3e-18 97.1 69 65.2
vmacro06665 Vaccinium macrocarpon HOM05D002159 ORTHO05D005625 1.3e-18 97.1 69 68.1
Migut.F01111 Erythranthe guttata HOM05D002159 ORTHO05D005625 1.6e-18 96.7 69 63.8
FvH4_7g29660 Fragaria vesca HOM05D002159 ORTHO05D005625 1.6e-18 96.7 69 66.7
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.6e-18 96.7 69 66.7
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.6e-18 96.7 69 66.7
FAN03G1172 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.6e-18 96.7 69 66.7
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.6e-18 96.7 69 66.7
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.6e-18 96.7 69 66.7
Sc13g0008820 Simmondsia chinensis HOM05D002159 ORTHO05D005625 1.6e-18 96.7 69 63.8
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.1e-18 96.3 69 66.7
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 2.8e-18 95.9 69 68.1
Cc02_g02790 Coffea canephora HOM05D002159 ORTHO05D005625 2.8e-18 95.9 69 65.2
MD01G1203600 Malus domestica HOM05D002159 ORTHO05D005625 2.8e-18 95.9 67 68.7
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 2.8e-18 95.9 69 65.2
Psat0s1874g0200 Pisum sativum HOM05D002159 ORTHO05D005625 6.2e-18 94.7 69 63.8
RcHm_v2.0_Chr1g0378701 Rosa chinensis HOM05D002159 ORTHO05D005625 6.2e-18 94.7 69 66.7
RcHm_v2.0_Chr1g0379181 Rosa chinensis HOM05D002159 ORTHO05D005625 6.2e-18 94.7 69 66.7
RcHm_v2.0_Chr1g0379351 Rosa chinensis HOM05D002159 ORTHO05D005625 6.2e-18 94.7 69 66.7
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 6.2e-18 94.7 69 66.7
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 6.2e-18 94.7 69 66.7
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 8.1e-18 94.4 69 63.8
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 1.1e-17 94.0 69 68.1
CANSAT21G0489 Cannabis sativa HOM05D002159 ORTHO05D005625 1.4e-17 93.6 69 62.3
Lj1A1000T74 Lonicera japonica HOM05D002159 ORTHO05D005625 1.4e-17 93.6 69 63.8
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 1.4e-17 93.6 69 63.8
BcaNung05469 Brassica carinata HOM05D002159 ORTHO05D005625 3.1e-17 92.4 69 66.7
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 3.1e-17 92.4 69 66.7
BolC7t44909H Brassica oleracea HOM05D002159 ORTHO05D005625 3.1e-17 92.4 69 66.7
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 3.1e-17 92.4 69 66.7
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 3.1e-17 92.4 69 66.7
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 3.1e-17 92.4 69 63.8
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 3.1e-17 92.4 69 66.7
BcaNung01838 Brassica carinata HOM05D002159 ORTHO05D005625 4.0e-17 92.0 69 66.7
CSS0008751 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 4.0e-17 92.0 69 62.3
CSS0044503 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 4.0e-17 92.0 69 62.3
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 6.9e-17 91.3 69 65.2
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 9.0e-17 90.9 69 65.2
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 9.0e-17 90.9 69 65.2
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 9.0e-17 90.9 69 65.2
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 1.5e-16 90.1 69 65.2
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.5e-16 90.1 69 63.8
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 3.4e-16 89.0 69 62.3
HPP92_025730 Vanilla planifolia HOM05D002159 ORTHO05D005625 3.4e-16 89.0 69 60.9
HPP92_025733 Vanilla planifolia HOM05D002159 ORTHO05D005625 3.4e-16 89.0 69 60.9
SGA_v2.0_scaffold10G05332 Striga asiatica HOM05D002159 ORTHO05D005625 5.8e-16 88.2 68 61.8
ATR0680G292 Amborella trichopoda HOM05D002159 ORTHO05D005625 3.8e-15 85.5 65 61.5
FvH4_7g30022 Fragaria vesca HOM05D002159 ORTHO05D005625 9.3e-14 80.9 57 68.4
Mapoly0007s0176 Marchantia polymorpha HOM05D002159 ORTHO05D005625 9.3e-14 80.9 69 55.1
PSO423G0230 Papaver somniferum HOM05D002159 ORTHO05D005625 9.3e-14 80.9 71 53.5
Pp3c9_11100 Physcomitrium patens HOM05D002159 ORTHO05D005625 2.1e-13 79.7 69 52.2
Zm00001eb162800 Zea mays HOM05D002159 ORTHO05D005625 2.1e-13 79.7 69 58.0
SMO111G0062 Selaginella moellendorffii HOM05D002159 ORTHO05D005625 3.5e-13 79.0 69 55.1
Os09g0569400 Oryza sativa ssp. japonica HOM05D002159 ORTHO05D005625 1.3e-12 77.0 67 58.2
FAN06G2653 Fragaria x ananassa HOM05D002159 ORTHO05D005625 3.0e-12 75.9 48 75.0
CDE06G0059 Ceratophyllum demersum HOM05D002159 ORTHO05D005625 4.3e-11 72.0 78 48.7
AagrBONN_evm.TU.Sc2ySwM_117.3689 Anthoceros agrestis HOM05D002159 ORTHO05D005625 9.6e-11 70.9 50 64.0
AL6G35160 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 2.1e-10 69.7 69 52.2
Glyma.11G171003 Glycine max HOM05D002159 ORTHO05D005625 1.1e-09 67.4 44 70.5
CBR_g4749 Chara braunii HOM05D002159 ORTHO05D005625 1.4e-09 67.0 68 50.0
SHI25894 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-09 66.2 66 57.6
RcHm_v2.0_Chr1g0377681 Rosa chinensis HOM05D002159 ORTHO05D005625 3.1e-09 65.9 44 68.2
MCO01G234 Micromonas commoda HOM05D002159 ORTHO05D005625 2.0e-08 63.2 61 54.1
MCO01G235 Micromonas commoda HOM05D002159 ORTHO05D005625 2.0e-08 63.2 61 54.1
unitig_26.g10199 Utricularia gibba HOM05D002159 ORTHO05D005625 2.2e-07 59.7 69 43.5


User provided reference genes

Program Settings