Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08814 Sapria himalayana HOM05D004526 ORTHO05D005548 1.4e-43 179.1 86 100.0
Sabra17G0069000 Salix brachista HOM05D004526 ORTHO05D005548 1.3e-12 76.3 43 76.7
ClCG09G018400 Citrullus lanatus HOM05D004526 ORTHO05D005548 1.7e-12 75.9 43 72.1
CsaV3_5G037880 Cucumis sativus L. HOM05D004526 ORTHO05D005548 1.7e-12 75.9 43 72.1
Potri.017G077200 Populus trichocarpa HOM05D004526 ORTHO05D005548 1.7e-12 75.9 43 74.4
THA.LOC104811064 Tarenaya hassleriana HOM05D004526 ORTHO05D005548 2.3e-12 75.5 43 67.4
CSS0019571 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 2.9e-12 75.1 43 74.4
Nn3g17130 Nelumbo nucifera HOM05D004526 ORTHO05D005548 2.9e-12 75.1 43 69.8
Gohir.A05G364100 Gossypium hirsutum HOM05D004526 ORTHO05D005548 5.0e-12 74.3 43 74.4
Gohir.D04G050600 Gossypium hirsutum HOM05D004526 ORTHO05D005548 5.0e-12 74.3 43 74.4
Gorai.012G056100 Gossypium raimondii HOM05D004526 ORTHO05D005548 5.0e-12 74.3 43 74.4
GSVIVG01032607001 Vitis vinifera HOM05D004526 ORTHO05D005548 5.0e-12 74.3 43 72.1
CSS0012548 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 6.6e-12 73.9 42 73.8
Duzib147G0459 Durio zibethinus HOM05D004526 ORTHO05D005548 6.6e-12 73.9 43 74.4
Eucgr.I01917 Eucalyptus grandis HOM05D004526 ORTHO05D005548 6.6e-12 73.9 43 67.4
Medtr1g116060 Medicago truncatula HOM05D004526 ORTHO05D005548 6.6e-12 73.9 43 72.1
Nn4g23045 Nelumbo nucifera HOM05D004526 ORTHO05D005548 6.6e-12 73.9 43 72.1
Cfa007509 Carpinus fangiana HOM05D004526 ORTHO05D005548 8.6e-12 73.6 43 74.4
Haze_14584 Corylus avellana HOM05D004526 ORTHO05D005548 8.6e-12 73.6 43 74.4
Hund13244 Selenicereus undatus HOM05D004526 ORTHO05D005548 8.6e-12 73.6 43 72.1
Sc11g0006930 Simmondsia chinensis HOM05D004526 ORTHO05D005548 8.6e-12 73.6 43 72.1
TAR481G0009 Trochodendron aralioides HOM05D004526 ORTHO05D005548 8.6e-12 73.6 43 69.8
EL10Ac2g02933 Beta vulgaris HOM05D004526 ORTHO05D005548 1.1e-11 73.2 43 67.4
CiPaw.04G020200 Carya illinoinensis HOM05D004526 ORTHO05D005548 1.1e-11 73.2 43 72.1
Cc08_g10980 Coffea canephora HOM05D004526 ORTHO05D005548 1.1e-11 73.2 43 74.4
Dinv06512 Davidia involucrata HOM05D004526 ORTHO05D005548 1.1e-11 73.2 43 74.4
Dinv07025 Davidia involucrata HOM05D004526 ORTHO05D005548 1.1e-11 73.2 43 72.1
Sed0004091 Sechium edule HOM05D004526 ORTHO05D005548 1.1e-11 73.2 43 69.8
Thecc.04G074400 Theobroma cacao HOM05D004526 ORTHO05D005548 1.1e-11 73.2 43 72.1
CiPaw.03G030200 Carya illinoinensis HOM05D004526 ORTHO05D005548 1.5e-11 72.8 43 69.8
Phvul.007G007300 Phaseolus vulgaris HOM05D004526 ORTHO05D005548 1.5e-11 72.8 43 67.4
Glyma.10G292700 Glycine max HOM05D004526 ORTHO05D005548 1.9e-11 72.4 43 69.8
Manes.17G021000 Manihot esculenta HOM05D004526 ORTHO05D005548 1.9e-11 72.4 43 74.4
PGR142G4111 Punica granatum HOM05D004526 ORTHO05D005548 1.9e-11 72.4 43 69.8
COL.COLO4_25181 Corchorus olitorius HOM05D004526 ORTHO05D005548 2.5e-11 72.0 43 69.8
Glyma.20G242900 Glycine max HOM05D004526 ORTHO05D005548 2.5e-11 72.0 43 67.4
Psat6g239400 Pisum sativum HOM05D004526 ORTHO05D005548 2.5e-11 72.0 43 69.8
TPR.G10385 Trifolium pratense HOM05D004526 ORTHO05D005548 2.5e-11 72.0 43 67.4
arahy.Tifrunner.gnm1.ann1.31SG4H Arachis hypogaea HOM05D004526 ORTHO05D005548 3.3e-11 71.6 43 67.4
arahy.Tifrunner.gnm1.ann1.PC3EEW Arachis hypogaea HOM05D004526 ORTHO05D005548 3.3e-11 71.6 43 67.4
arahy.Tifrunner.gnm1.ann1.S1RF4U Arachis hypogaea HOM05D004526 ORTHO05D005548 3.3e-11 71.6 43 67.4
PGR142G2860 Punica granatum HOM05D004526 ORTHO05D005548 4.2e-11 71.2 43 67.4
TWI60G0005 Tripterygium wilfordii HOM05D004526 ORTHO05D005548 4.2e-11 71.2 43 69.8
Peaxi162Scf00345g00811 Petunia axillaris HOM05D004526 ORTHO05D005548 5.5e-11 70.9 43 67.4
Lj7A401T78 Lonicera japonica HOM05D004526 ORTHO05D005548 7.2e-11 70.5 43 67.4
arahy.Tifrunner.gnm1.ann1.C6A6VI Arachis hypogaea HOM05D004526 ORTHO05D005548 9.5e-11 70.1 43 65.1
Lalb_Chr21g0307111 Lupinus albus HOM05D004526 ORTHO05D005548 9.5e-11 70.1 43 65.1
MD17G1047000 Malus domestica HOM05D004526 ORTHO05D005548 9.5e-11 70.1 43 62.8
PGSC0003DMG400030284 Solanum tuberosum HOM05D004526 ORTHO05D005548 9.5e-11 70.1 43 69.8
Nitab4.5_0000157g0090 Nicotiana tabacum HOM05D004526 ORTHO05D005548 1.2e-10 69.7 43 65.1
Nitab4.5_0001504g0050 Nicotiana tabacum HOM05D004526 ORTHO05D005548 1.2e-10 69.7 43 65.1
QL02p080561 Quercus lobata HOM05D004526 ORTHO05D005548 1.2e-10 69.7 43 69.8
Ca_11340_v3 Cicer arietinum L. HOM05D004526 ORTHO05D005548 1.6e-10 69.3 43 65.1
PSO591G0197 Papaver somniferum HOM05D004526 ORTHO05D005548 1.6e-10 69.3 43 65.1
PSO832G1140 Papaver somniferum HOM05D004526 ORTHO05D005548 1.6e-10 69.3 43 65.1
Thhalv10020725m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 2.1e-10 68.9 43 60.5
Atru.chr8.1914 Acer truncatum HOM05D004526 ORTHO05D005548 2.8e-10 68.6 43 62.8
DCAR_021672 Daucus carota HOM05D004526 ORTHO05D005548 2.8e-10 68.6 42 64.3
Aa31LG5G15080 Aethionema arabicum HOM05D004526 ORTHO05D005548 3.6e-10 68.2 43 58.1
Aqoxy3G03268 Aquilegia oxysepala HOM05D004526 ORTHO05D005548 3.6e-10 68.2 43 69.8
BcaB04g19307 Brassica carinata HOM05D004526 ORTHO05D005548 3.6e-10 68.2 43 60.5
BcaC01g04355 Brassica carinata HOM05D004526 ORTHO05D005548 3.6e-10 68.2 43 60.5
A03p33780 Brassica napus HOM05D004526 ORTHO05D005548 3.6e-10 68.2 43 60.5
C03p41080 Brassica napus HOM05D004526 ORTHO05D005548 3.6e-10 68.2 43 60.5
BolC3t16397H Brassica oleracea HOM05D004526 ORTHO05D005548 3.6e-10 68.2 43 60.5
CSS0037061 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 3.6e-10 68.2 43 65.1
CAN.G226.26 Capsicum annuum HOM05D004526 ORTHO05D005548 3.6e-10 68.2 43 62.8
CDE04G0248 Ceratophyllum demersum HOM05D004526 ORTHO05D005548 3.6e-10 68.2 43 69.8
Prupe.3G272100 Prunus persica HOM05D004526 ORTHO05D005548 4.7e-10 67.8 43 69.8
Sp1g35350 Schrenkiella parvula HOM05D004526 ORTHO05D005548 4.7e-10 67.8 43 58.1
Sopen01g004780 Solanum pennellii HOM05D004526 ORTHO05D005548 4.7e-10 67.8 43 67.4
Ciclev10011737m.g Citrus clementina HOM05D004526 ORTHO05D005548 6.1e-10 67.4 43 65.1
Mapoly0016s0080 Marchantia polymorpha HOM05D004526 ORTHO05D005548 6.1e-10 67.4 43 60.5
PSO478G0915 Papaver somniferum HOM05D004526 ORTHO05D005548 6.1e-10 67.4 43 65.1
Solyc01g009290.4 Solanum lycopersicum HOM05D004526 ORTHO05D005548 6.1e-10 67.4 43 65.1
AL3G14740 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 8.0e-10 67.0 43 55.8
Carub.0003s0384 Capsella rubella HOM05D004526 ORTHO05D005548 8.0e-10 67.0 43 58.1
RcHm_v2.0_Chr2g0169161 Rosa chinensis HOM05D004526 ORTHO05D005548 8.0e-10 67.0 43 60.5
BraA03t12552Z Brassica rapa HOM05D004526 ORTHO05D005548 1.0e-09 66.6 43 58.1
HanXRQChr09g0265571 Helianthus annuus HOM05D004526 ORTHO05D005548 1.0e-09 66.6 43 60.5
Lsat_1_v5_gn_4_176840 Lactuca sativa HOM05D004526 ORTHO05D005548 1.0e-09 66.6 43 60.5
MD09G1046500 Malus domestica HOM05D004526 ORTHO05D005548 1.4e-09 66.2 43 60.5
Sp3g03530 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.4e-09 66.2 43 58.1
SEGI_10762 Sequoiadendron giganteum HOM05D004526 ORTHO05D005548 1.4e-09 66.2 43 60.5
ECA232G3358 Erigeron canadensis HOM05D004526 ORTHO05D005548 1.8e-09 65.9 43 55.8
unitig_578.g15969 Utricularia gibba HOM05D004526 ORTHO05D005548 2.3e-09 65.5 43 62.8
AT3G04680 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 3.0e-09 65.1 43 53.5
Migut.E01591 Erythranthe guttata HOM05D004526 ORTHO05D005548 3.0e-09 65.1 43 62.8
PSO017G3834 Papaver somniferum HOM05D004526 ORTHO05D005548 3.0e-09 65.1 43 62.8
RhsimUnG0055200 Rhododendron simsii HOM05D004526 ORTHO05D005548 3.0e-09 65.1 43 65.1
MSTRG.1703 Avicennia marina HOM05D004526 ORTHO05D005548 4.0e-09 64.7 43 62.8
CSS0008092 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 4.0e-09 64.7 39 69.2
Zm00001eb205260 Zea mays HOM05D004526 ORTHO05D005548 4.0e-09 64.7 43 58.1
HanXRQChr12g0357441 Helianthus annuus HOM05D004526 ORTHO05D005548 5.2e-09 64.3 43 58.1
Oeu018626.2 Olea europaea HOM05D004526 ORTHO05D005548 5.2e-09 64.3 43 62.8
Os02g0217500 Oryza sativa ssp. japonica HOM05D004526 ORTHO05D005548 5.2e-09 64.3 43 58.1
SalBow1G4721 Salvia bowleyana HOM05D004526 ORTHO05D005548 5.2e-09 64.3 43 60.5
CBR_g42172 Chara braunii HOM05D004526 ORTHO05D005548 6.8e-09 63.9 43 58.1
FvH4_6g49260 Fragaria vesca HOM05D004526 ORTHO05D005548 6.8e-09 63.9 43 55.8
FAN02G4162 Fragaria x ananassa HOM05D004526 ORTHO05D005548 6.8e-09 63.9 43 55.8
FAN05G4948 Fragaria x ananassa HOM05D004526 ORTHO05D005548 6.8e-09 63.9 43 55.8
FAN09G4881 Fragaria x ananassa HOM05D004526 ORTHO05D005548 6.8e-09 63.9 43 55.8
FAN14G2223 Fragaria x ananassa HOM05D004526 ORTHO05D005548 6.8e-09 63.9 43 55.8
Pp3c21_6910 Physcomitrium patens HOM05D004526 ORTHO05D005548 6.8e-09 63.9 43 58.1
SMO165G0052 Selaginella moellendorffii HOM05D004526 ORTHO05D005548 8.9e-09 63.5 42 57.1
A04p15620 Brassica napus HOM05D004526 ORTHO05D005548 1.5e-08 62.8 61 47.5
BcaB06g27742 Brassica carinata HOM05D004526 ORTHO05D005548 2.0e-08 62.4 61 47.5
AagrBONN_evm.TU.Sc2ySwM_344.3939 Anthoceros agrestis HOM05D004526 ORTHO05D005548 2.6e-08 62.0 43 51.2
C06p02960 Brassica napus HOM05D004526 ORTHO05D005548 2.6e-08 62.0 41 53.7
BolC6t35419H Brassica oleracea HOM05D004526 ORTHO05D005548 2.6e-08 62.0 41 53.7
Sp7g01800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 3.4e-08 61.6 43 60.5
MCO09G184 Micromonas commoda HOM05D004526 ORTHO05D005548 7.5e-08 60.5 44 50.0
BcaC02g08842 Brassica carinata HOM05D004526 ORTHO05D005548 9.8e-08 60.1 61 45.9
C04p49900 Brassica napus HOM05D004526 ORTHO05D005548 9.8e-08 60.1 61 45.9
PRCOL_00003252 Prasinoderma coloniale HOM05D004526 ORTHO05D005548 9.8e-08 60.1 43 48.8
Sp7g07820 Schrenkiella parvula HOM05D004526 ORTHO05D005548 9.8e-08 60.1 63 42.9
BcaC08g43036 Brassica carinata HOM05D004526 ORTHO05D005548 2.2e-07 58.9 41 51.2
BolC4t26581H Brassica oleracea HOM05D004526 ORTHO05D005548 2.8e-07 58.5 61 44.3
BcaB07g33761 Brassica carinata HOM05D004526 ORTHO05D005548 3.7e-07 58.2 43 41.9
Sp5g20800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 3.7e-07 58.2 41 58.5
CARHR078910 Cardamine hirsuta HOM05D004526 ORTHO05D005548 4.9e-07 57.8 43 51.2
VMungo0720G0008 Vigna mungo HOM05D004526 ORTHO05D005548 6.3e-07 57.4 34 70.6
Actinidia06070 Actinidia chinensis HOM05D004526 ORTHO05D005548 8.3e-07 57.0 34 67.6
Thhalv10028283m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 8.3e-07 57.0 61 41.0
HPP92_009728 Vanilla planifolia HOM05D004526 ORTHO05D005548 2.4e-06 55.5 43 46.5
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 4.1e-06 54.7 39 61.5


User provided reference genes

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