Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06581 Sapria himalayana HOM05D000622 ORTHO05D000475 2.0e-55 218.8 107 100.0
Manes.01G096400 Manihot esculenta HOM05D000622 ORTHO05D000475 5.8e-10 67.8 53 62.3
Lj4A119G48 Lonicera japonica HOM05D000622 ORTHO05D000475 1.7e-09 66.2 48 64.6
Hund13143 Selenicereus undatus HOM05D000622 ORTHO05D000475 2.2e-09 65.9 44 63.6
THA.LOC104805514 Tarenaya hassleriana HOM05D000622 ORTHO05D000475 2.9e-09 65.5 44 65.9
Haze_14425 Corylus avellana HOM05D000622 ORTHO05D000475 4.9e-09 64.7 60 50.0
Sabra17G0083400 Salix brachista HOM05D000622 ORTHO05D000475 8.4e-09 63.9 53 54.7
VMungo1383G2491 Vigna mungo HOM05D000622 ORTHO05D000475 8.4e-09 63.9 94 39.4
Cpa.g.sc14.183 Carica papaya HOM05D000622 ORTHO05D000475 1.1e-08 63.5 61 54.1
Psat0s2539g0040 Pisum sativum HOM05D000622 ORTHO05D000475 1.4e-08 63.2 53 54.7
CSS0044038 Camellia sinensis var. sinensis HOM05D000622 ORTHO05D000475 1.9e-08 62.8 53 54.7
Gohir.A09G009000 Gossypium hirsutum HOM05D000622 ORTHO05D000475 1.9e-08 62.8 44 65.9
Gohir.D09G008200 Gossypium hirsutum HOM05D000622 ORTHO05D000475 1.9e-08 62.8 44 65.9
Gorai.006G009900 Gossypium raimondii HOM05D000622 ORTHO05D000475 1.9e-08 62.8 44 65.9
HanXRQChr15g0472471 Helianthus annuus HOM05D000622 ORTHO05D000475 1.9e-08 62.8 39 71.8
Potri.017G094600 Populus trichocarpa HOM05D000622 ORTHO05D000475 1.9e-08 62.8 44 61.4
QL02p067533 Quercus lobata HOM05D000622 ORTHO05D000475 1.9e-08 62.8 53 58.5
TWI32G0419 Tripterygium wilfordii HOM05D000622 ORTHO05D000475 1.9e-08 62.8 53 54.7
TWI60G0492 Tripterygium wilfordii HOM05D000622 ORTHO05D000475 1.9e-08 62.8 53 50.9
Prupe.3G254500 Prunus persica HOM05D000622 ORTHO05D000475 2.5e-08 62.4 53 56.6
ClCG06G015590 Citrullus lanatus HOM05D000622 ORTHO05D000475 3.2e-08 62.0 48 58.3
MELO3C017229.2 Cucumis melo HOM05D000622 ORTHO05D000475 3.2e-08 62.0 48 58.3
Dinv34937 Davidia involucrata HOM05D000622 ORTHO05D000475 3.2e-08 62.0 57 50.9
Duzib147G1063 Durio zibethinus HOM05D000622 ORTHO05D000475 3.2e-08 62.0 53 58.5
Glyma.08G246600 Glycine max HOM05D000622 ORTHO05D000475 4.2e-08 61.6 53 54.7
Lj5A102T90 Lonicera japonica HOM05D000622 ORTHO05D000475 4.2e-08 61.6 44 61.4
TPR.G25595 Trifolium pratense HOM05D000622 ORTHO05D000475 4.2e-08 61.6 53 56.6
CiPaw.04G055200 Carya illinoinensis HOM05D000622 ORTHO05D000475 5.5e-08 61.2 44 61.4
Ca_21765_v3 Cicer arietinum L. HOM05D000622 ORTHO05D000475 5.5e-08 61.2 44 63.6
ECA246G0234 Erigeron canadensis HOM05D000622 ORTHO05D000475 5.5e-08 61.2 40 65.0
HanXRQChr08g0230481 Helianthus annuus HOM05D000622 ORTHO05D000475 5.5e-08 61.2 51 56.9
Sopen02g033610 Solanum pennellii HOM05D000622 ORTHO05D000475 5.5e-08 61.2 44 63.6
PGSC0003DMG400001461 Solanum tuberosum HOM05D000622 ORTHO05D000475 5.5e-08 61.2 44 63.6
GSVIVG01008107001 Vitis vinifera HOM05D000622 ORTHO05D000475 5.5e-08 61.2 43 60.5
GSVIVG01032909001 Vitis vinifera HOM05D000622 ORTHO05D000475 5.5e-08 61.2 44 61.4
BraA02t09078Z Brassica rapa HOM05D000622 ORTHO05D000475 7.1e-08 60.8 53 56.6
Ciclev10011679m.g Citrus clementina HOM05D000622 ORTHO05D000475 7.1e-08 60.8 39 69.2
COL.COLO4_04940 Corchorus olitorius HOM05D000622 ORTHO05D000475 7.1e-08 60.8 44 63.6
Haze_07738 Corylus avellana HOM05D000622 ORTHO05D000475 7.1e-08 60.8 48 60.4
MD09G1067300 Malus domestica HOM05D000622 ORTHO05D000475 7.1e-08 60.8 44 61.4
Phvul.008G032800 Phaseolus vulgaris HOM05D000622 ORTHO05D000475 7.1e-08 60.8 53 54.7
RcHm_v2.0_Chr2g0165791 Rosa chinensis HOM05D000622 ORTHO05D000475 7.1e-08 60.8 44 63.6
Sed0006272 Sechium edule HOM05D000622 ORTHO05D000475 7.1e-08 60.8 48 56.2
arahy.Tifrunner.gnm1.ann1.N01RGU Arachis hypogaea HOM05D000622 ORTHO05D000475 9.3e-08 60.5 39 69.2
arahy.Tifrunner.gnm1.ann1.YCZ32I Arachis hypogaea HOM05D000622 ORTHO05D000475 9.3e-08 60.5 39 69.2
BcaNung06898 Brassica carinata HOM05D000622 ORTHO05D000475 9.3e-08 60.5 53 54.7
CAN.G497.98 Capsicum annuum HOM05D000622 ORTHO05D000475 9.3e-08 60.5 44 59.1
Duzib264G0009 Durio zibethinus HOM05D000622 ORTHO05D000475 9.3e-08 60.5 53 54.7
Glyma.05G020200 Glycine max HOM05D000622 ORTHO05D000475 9.3e-08 60.5 39 69.2
Glyma.17G079200 Glycine max HOM05D000622 ORTHO05D000475 9.3e-08 60.5 39 69.2
MD17G1060400 Malus domestica HOM05D000622 ORTHO05D000475 9.3e-08 60.5 44 61.4
BraA09t36367Z Brassica rapa HOM05D000622 ORTHO05D000475 1.2e-07 60.1 53 52.8
Cfa007672 Carpinus fangiana HOM05D000622 ORTHO05D000475 1.2e-07 60.1 53 54.7
CiPaw.03G088000 Carya illinoinensis HOM05D000622 ORTHO05D000475 1.2e-07 60.1 53 54.7
Ca_04362_v3 Cicer arietinum L. HOM05D000622 ORTHO05D000475 1.2e-07 60.1 53 56.6
CsaV3_1G002980 Cucumis sativus L. HOM05D000622 ORTHO05D000475 1.2e-07 60.1 48 56.2
Phvul.003G184000 Phaseolus vulgaris HOM05D000622 ORTHO05D000475 1.2e-07 60.1 39 66.7
TAR374G1402 Trochodendron aralioides HOM05D000622 ORTHO05D000475 1.2e-07 60.1 53 54.7
HPP92_024245 Vanilla planifolia HOM05D000622 ORTHO05D000475 1.2e-07 60.1 44 63.6
CANSAT64G2708 Cannabis sativa HOM05D000622 ORTHO05D000475 1.6e-07 59.7 53 54.7
Manes.02G055500 Manihot esculenta HOM05D000622 ORTHO05D000475 1.6e-07 59.7 53 54.7
Manes.06G083600 Manihot esculenta HOM05D000622 ORTHO05D000475 1.6e-07 59.7 39 66.7
Thecc.04G096300 Theobroma cacao HOM05D000622 ORTHO05D000475 1.6e-07 59.7 48 58.3
BcaC03g18069 Brassica carinata HOM05D000622 ORTHO05D000475 2.1e-07 59.3 53 54.7
BolC2t12176H Brassica oleracea HOM05D000622 ORTHO05D000475 2.1e-07 59.3 53 54.7
Duzib205G1978 Durio zibethinus HOM05D000622 ORTHO05D000475 2.1e-07 59.3 47 59.6
Manes.14G086400 Manihot esculenta HOM05D000622 ORTHO05D000475 2.1e-07 59.3 39 66.7
Zm00001eb393140 Zea mays HOM05D000622 ORTHO05D000475 2.1e-07 59.3 52 53.8
Aa31LG11G2300 Aethionema arabicum HOM05D000622 ORTHO05D000475 2.7e-07 58.9 53 52.8
C02p61290 Brassica napus HOM05D000622 ORTHO05D000475 2.7e-07 58.9 48 58.3
Cpa.g.sc746.3 Carica papaya HOM05D000622 ORTHO05D000475 2.7e-07 58.9 48 58.3
Cfa019346 Carpinus fangiana HOM05D000622 ORTHO05D000475 2.7e-07 58.9 48 58.3
Duzib084G0887 Durio zibethinus HOM05D000622 ORTHO05D000475 2.7e-07 58.9 48 56.2
Gohir.A12G183100 Gossypium hirsutum HOM05D000622 ORTHO05D000475 2.7e-07 58.9 48 58.3
HanXRQChr17g0550231 Helianthus annuus HOM05D000622 ORTHO05D000475 2.7e-07 58.9 44 61.4
Hma1.2p1_0322F.1_g124660 Hydrangea macrophylla HOM05D000622 ORTHO05D000475 2.7e-07 58.9 39 59.0
Lsat_1_v5_gn_3_97460 Lactuca sativa HOM05D000622 ORTHO05D000475 2.7e-07 58.9 40 62.5
MSTRG.3358 Avicennia marina HOM05D000622 ORTHO05D000475 3.5e-07 58.5 44 59.1
Dinv22771 Davidia involucrata HOM05D000622 ORTHO05D000475 3.5e-07 58.5 48 60.4
FvH4_6g46800 Fragaria vesca HOM05D000622 ORTHO05D000475 3.5e-07 58.5 44 61.4
FAN02G1607 Fragaria x ananassa HOM05D000622 ORTHO05D000475 3.5e-07 58.5 44 61.4
FAN09G3898 Fragaria x ananassa HOM05D000622 ORTHO05D000475 3.5e-07 58.5 44 61.4
FAN14G3609 Fragaria x ananassa HOM05D000622 ORTHO05D000475 3.5e-07 58.5 44 61.4
Glyma.20G025500 Glycine max HOM05D000622 ORTHO05D000475 3.5e-07 58.5 43 58.1
Lj1g0024360 Lotus japonicus HOM05D000622 ORTHO05D000475 3.5e-07 58.5 43 65.1
HPP92_006217 Vanilla planifolia HOM05D000622 ORTHO05D000475 3.5e-07 58.5 54 59.3
VMungo1215G0311 Vigna mungo HOM05D000622 ORTHO05D000475 3.5e-07 58.5 39 66.7
A02p41330 Brassica napus HOM05D000622 ORTHO05D000475 4.6e-07 58.2 48 58.3
A03p46690 Brassica napus HOM05D000622 ORTHO05D000475 4.6e-07 58.2 48 56.2
A09p07180 Brassica napus HOM05D000622 ORTHO05D000475 4.6e-07 58.2 53 50.9
C09p08020 Brassica napus HOM05D000622 ORTHO05D000475 4.6e-07 58.2 53 50.9
BraA03t13792Z Brassica rapa HOM05D000622 ORTHO05D000475 4.6e-07 58.2 48 56.2
Gohir.A11G033400 Gossypium hirsutum HOM05D000622 ORTHO05D000475 4.6e-07 58.2 39 66.7
Gohir.D11G036800 Gossypium hirsutum HOM05D000622 ORTHO05D000475 4.6e-07 58.2 39 66.7
Gorai.007G039600 Gossypium raimondii HOM05D000622 ORTHO05D000475 4.6e-07 58.2 39 66.7
Lsat_1_v5_gn_5_22601 Lactuca sativa HOM05D000622 ORTHO05D000475 4.6e-07 58.2 53 50.9
Lj4g0001243 Lotus japonicus HOM05D000622 ORTHO05D000475 4.6e-07 58.2 39 64.1
Sed0001974 Sechium edule HOM05D000622 ORTHO05D000475 4.6e-07 58.2 48 56.2
TAR633G2797 Trochodendron aralioides HOM05D000622 ORTHO05D000475 4.6e-07 58.2 44 59.1
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 6.0e-07 57.8 39 64.1
BcaC04g23468 Brassica carinata HOM05D000622 ORTHO05D000475 6.0e-07 57.8 48 54.2
BolC9t53716H Brassica oleracea HOM05D000622 ORTHO05D000475 6.0e-07 57.8 48 54.2
FAN05G0429 Fragaria x ananassa HOM05D000622 ORTHO05D000475 6.0e-07 57.8 44 59.1
Gorai.008G199600 Gossypium raimondii HOM05D000622 ORTHO05D000475 6.0e-07 57.8 48 56.2
Medtr4g109640 Medicago truncatula HOM05D000622 ORTHO05D000475 6.0e-07 57.8 39 66.7
Rhsim10G0050000 Rhododendron simsii HOM05D000622 ORTHO05D000475 6.0e-07 57.8 49 57.1
Sopen02g011070 Solanum pennellii HOM05D000622 ORTHO05D026171 6.0e-07 57.8 48 52.1
THA.LOC104801144 Tarenaya hassleriana HOM05D000622 ORTHO05D000475 6.0e-07 57.8 39 69.2
arahy.Tifrunner.gnm1.ann1.E5YE70 Arachis hypogaea HOM05D000622 ORTHO05D000475 7.9e-07 57.4 43 55.8
arahy.Tifrunner.gnm1.ann1.I6685F Arachis hypogaea HOM05D000622 ORTHO05D000475 7.9e-07 57.4 43 55.8
CANSAT56G0997 Cannabis sativa HOM05D000622 ORTHO05D000475 7.9e-07 57.4 39 61.5
MBI16_g10834_MAGBIO Magnolia biondii HOM05D000622 ORTHO05D000475 7.9e-07 57.4 53 52.8
SalBow1G1760 Salvia bowleyana HOM05D000622 ORTHO05D000475 7.9e-07 57.4 52 51.9
CARHR274690 Cardamine hirsuta HOM05D000622 ORTHO05D000475 1.0e-06 57.0 48 54.2
COL.COLO4_24338 Corchorus olitorius HOM05D000622 ORTHO05D000475 1.0e-06 57.0 48 58.3
Thhalv10005527m.g Eutrema salsugineum HOM05D000622 ORTHO05D000475 1.0e-06 57.0 53 50.9
Glyma.07G225500 Glycine max HOM05D000622 ORTHO05D000475 1.0e-06 57.0 43 53.5
Lalb_Chr12g0197251 Lupinus albus HOM05D000622 ORTHO05D000475 1.0e-06 57.0 39 66.7
Medtr7g013840 Medicago truncatula HOM05D000622 ORTHO05D000475 1.0e-06 57.0 53 52.8
Nitab4.5_0002957g0020 Nicotiana tabacum HOM05D000622 ORTHO05D000475 1.0e-06 57.0 44 54.5
Peaxi162Scf00991g00210 Petunia axillaris HOM05D000622 ORTHO05D000475 1.0e-06 57.0 44 54.5
Hund09922 Selenicereus undatus HOM05D000622 ORTHO05D000475 1.0e-06 57.0 39 64.1
THA.LOC104818351 Tarenaya hassleriana HOM05D000622 ORTHO05D000475 1.0e-06 57.0 48 56.2
unitig_0.g1788 Utricularia gibba HOM05D000622 ORTHO05D000475 1.0e-06 57.0 44 59.1
CAN.G1130.11 Capsicum annuum HOM05D000622 ORTHO05D000475 1.3e-06 56.6 53 45.3
Psat4g047640 Pisum sativum HOM05D000622 ORTHO05D000475 1.3e-06 56.6 39 64.1
Sabra15G0084200 Salix brachista HOM05D000622 ORTHO05D000475 1.3e-06 56.6 39 59.0
Solyc02g030530.1 Solanum lycopersicum HOM05D000622 ORTHO05D000475 1.3e-06 56.6 44 54.5
Solyc02g066830.4 Solanum lycopersicum HOM05D000622 ORTHO05D000475 1.3e-06 56.6 44 54.5
SGA_v2.0_scaffold156G37266 Striga asiatica HOM05D000622 ORTHO05D000475 1.3e-06 56.6 56 50.0
HPP92_009479 Vanilla planifolia HOM05D000622 ORTHO05D000475 1.3e-06 56.6 58 50.0
AL8G37630 Arabidopsis lyrata HOM05D000622 ORTHO05D000475 1.8e-06 56.2 53 50.9
AT5G60980 Arabidopsis thaliana HOM05D000622 ORTHO05D000475 1.8e-06 56.2 53 50.9
ECA246G2429 Erigeron canadensis HOM05D000622 ORTHO05D000475 1.8e-06 56.2 59 44.1
MD06G1226000 Malus domestica HOM05D000622 ORTHO05D000475 1.8e-06 56.2 39 61.5
Nitab4.5_0000212g0280 Nicotiana tabacum HOM05D000622 ORTHO05D000475 1.8e-06 56.2 48 52.1
Atru.chr9.556 Acer truncatum HOM05D000622 ORTHO05D000475 2.3e-06 55.8 39 66.7
Actinidia35040 Actinidia chinensis HOM05D000622 ORTHO05D000475 2.3e-06 55.8 53 54.7
Aqoxy3G03678 Aquilegia oxysepala HOM05D000622 ORTHO05D000475 2.3e-06 55.8 39 64.1
Carub.0008s2167 Capsella rubella HOM05D000622 ORTHO05D000475 2.3e-06 55.8 48 54.2
AUR62008546 Chenopodium quinoa HOM05D000622 ORTHO05D000475 2.3e-06 55.8 39 64.1
MBI07_g27650_MAGBIO Magnolia biondii HOM05D000622 ORTHO05D000475 2.3e-06 55.8 44 59.1
MBI07_g46755_MAGBIO Magnolia biondii HOM05D000622 ORTHO05D000475 2.3e-06 55.8 44 59.1
Nn5g29109 Nelumbo nucifera HOM05D000622 ORTHO05D000475 2.3e-06 55.8 49 53.1
Os03g0418800 Oryza sativa ssp. japonica HOM05D000622 ORTHO05D000475 2.3e-06 55.8 56 42.9
Sp2g24290 Schrenkiella parvula HOM05D000622 ORTHO05D000475 2.3e-06 55.8 48 54.2
vmacro05640 Vaccinium macrocarpon HOM05D000622 ORTHO05D000475 2.3e-06 55.8 48 54.2
BcaC06g33186 Brassica carinata HOM05D000622 ORTHO05D000475 3.0e-06 55.5 53 50.9
C07p44750 Brassica napus HOM05D000622 ORTHO05D000475 3.0e-06 55.5 53 50.9
BolC7t44998H Brassica oleracea HOM05D000622 ORTHO05D000475 3.0e-06 55.5 53 50.9
Migut.K01271 Erythranthe guttata HOM05D000622 ORTHO05D000475 3.0e-06 55.5 39 64.1
Nn3g17465 Nelumbo nucifera HOM05D000622 ORTHO05D000475 3.0e-06 55.5 48 56.2
Nn3g20052 Nelumbo nucifera HOM05D000622 ORTHO05D000475 3.0e-06 55.5 44 59.1
Sc04g0004390 Simmondsia chinensis HOM05D000622 ORTHO05D000475 3.0e-06 55.5 39 61.5
TAR629G1969 Trochodendron aralioides HOM05D000622 ORTHO05D000475 3.0e-06 55.5 44 61.4
VMungo0251G1717 Vigna mungo HOM05D000622 ORTHO05D000475 3.0e-06 55.5 43 53.5
Gohir.D12G186200 Gossypium hirsutum HOM05D000622 ORTHO05D000475 3.9e-06 55.1 39 61.5
MD14G1212900 Malus domestica HOM05D000622 ORTHO05D000475 3.9e-06 55.1 39 59.0
Sopen00g003130 Solanum pennellii HOM05D000622 ORTHO05D000475 3.9e-06 55.1 44 52.3
GSVIVG01012227001 Vitis vinifera HOM05D000622 ORTHO05D000475 3.9e-06 55.1 39 64.1
Ah.10g032290 Amaranthus hybridus HOM05D000622 ORTHO05D000475 5.1e-06 54.7 44 52.3
CiPaw.11G054600 Carya illinoinensis HOM05D000622 ORTHO05D000475 5.1e-06 54.7 39 66.7
Dinv17425 Davidia involucrata HOM05D000622 ORTHO05D000475 5.1e-06 54.7 39 66.7
HanXRQChr07g0206131 Helianthus annuus HOM05D000622 ORTHO05D000475 5.1e-06 54.7 64 48.4
Manes.05G109900 Manihot esculenta HOM05D000622 ORTHO05D000475 5.1e-06 54.7 57 43.9
Nn4g23441 Nelumbo nucifera HOM05D000622 ORTHO05D000475 5.1e-06 54.7 39 66.7
Prupe.5G206200 Prunus persica HOM05D000622 ORTHO05D000475 5.1e-06 54.7 39 59.0
EL10Ac5g11144 Beta vulgaris HOM05D000622 ORTHO05D000475 6.7e-06 54.3 39 59.0
FvH4_5g13730 Fragaria vesca HOM05D000622 ORTHO05D000475 6.7e-06 54.3 48 50.0
FAN08G2329 Fragaria x ananassa HOM05D000622 ORTHO05D000475 6.7e-06 54.3 48 50.0
FAN13G2713 Fragaria x ananassa HOM05D000622 ORTHO05D000475 6.7e-06 54.3 48 50.0
FAN18G4294 Fragaria x ananassa HOM05D000622 ORTHO05D000475 6.7e-06 54.3 48 50.0
Oeu025535.3 Olea europaea HOM05D000622 ORTHO05D000475 6.7e-06 54.3 44 56.8
RcHm_v2.0_Chr7g0183211 Rosa chinensis HOM05D000622 ORTHO05D000475 6.7e-06 54.3 48 50.0
Solyc02g032790.2 Solanum lycopersicum HOM05D000622 ORTHO05D000475 6.7e-06 54.3 48 50.0
SGA_v2.0_scaffold3G01631 Striga asiatica HOM05D000622 ORTHO05D000475 6.7e-06 54.3 44 54.5
Eucgr.K02533 Eucalyptus grandis HOM05D000622 ORTHO05D000475 8.7e-06 53.9 39 64.1
PGR044G1090 Punica granatum HOM05D000622 ORTHO05D000475 8.7e-06 53.9 39 59.0
Sopen02g016060 Solanum pennellii HOM05D000622 ORTHO05D000475 8.7e-06 53.9 44 52.3
TWI79G0840 Tripterygium wilfordii HOM05D000622 ORTHO05D000475 8.7e-06 53.9 52 44.2


User provided reference genes

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