Gene: Sopen02g016060

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g016060
  • Transcript Identifier Sopen02g016060.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 40139310-40147219 : positive

Gene Family Information

  • ID HOM05D000622
  • #Genes/#Species 916/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g016060.1

Descriptions

  • Description Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: transport, nucleocytoplasmic transport | LOCATED IN: intracellular | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 , RNA recognition motif, RNP-1 , Nuclear transport factor 2, Eukaryote , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT5G60980
GO:0090332
ISO
PLAZA Integrative Orthologystomatal closure AT5G48650
GO:1900425
ISO
PLAZA Integrative Orthologynegative regulation of defense response to bacterium AT5G48650

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G60980
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G03640

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G60980
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G07250
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G48650
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G48650

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018222 Nuclear transport factor 2, eukaryote
IPR002075 Nuclear transport factor 2
IPR000504 RNA recognition motif domain
IPR032710 NTF2-like domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR039539 Ras GTPase-activating protein-binding protein
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.8.1 RNA processing.mRNA sequestration.mRNA endoribonuclease (G3BP)