Gene: AT5G60980

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G60980
  • Transcript Identifier AT5G60980.2
  • Gene Type Coding gene
  • Location Chr5 : 24543988-24546027 : positive

Gene Family Information

  • ID HOM05D000622
  • #Genes/#Species 916/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G60980.2
  • uniprot Q9FME2

Descriptions

  • Description Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
  • Computational description Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 35964 Blast hits to 15476 proteins in 1126 species: Archae - 10; Bacteria - 13365; Metazoa - 10215; Fungi - 3021; Plants - 4733; Viruses - 543; Other Eukaryotes - 4077 (source: NCBI BLink).
  • Computational description Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 36196 Blast hits to 15965 proteins in 1132 species: Archae - 9; Bacteria - 13386; Metazoa - 10288; Fungi - 3119; Plants - 4760; Viruses - 542; Other Eukaryotes - 4092 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009737
IDA
GOA Databaseresponse to abscisic acid
GO:0031047
IEA
GOA Databasegene silencing by RNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 2 3
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus4
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm4
GO:0009536
HDA
Gene Ontologyplastid5
GO:0005829
IBA
Gene Ontologycytosol1
GO:1990904
IBA
Gene Ontologyribonucleoprotein complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032710 NTF2-like domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR018222 Nuclear transport factor 2, eukaryote
IPR002075 Nuclear transport factor 2
IPR039539 Ras GTPase-activating protein-binding protein
Mapman id Description
16.8.1 RNA processing.mRNA sequestration.mRNA endoribonuclease (G3BP)