Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00807 Sapria himalayana HOM05D004511 ORTHO05D005348 3.9e-72 274.6 133 100.0
TWI73G0808 Tripterygium wilfordii HOM05D004511 ORTHO05D005348 3.9e-40 168.3 93 86.0
vmacro08562 Vaccinium macrocarpon HOM05D004511 ORTHO05D005348 6.7e-40 167.5 100 80.0
Rhsim04G0171100 Rhododendron simsii HOM05D004511 ORTHO05D005348 1.1e-39 166.8 99 78.8
Actinidia27093 Actinidia chinensis HOM05D004511 ORTHO05D005348 1.5e-39 166.4 93 81.7
CANSAT78G2334 Cannabis sativa HOM05D004511 ORTHO05D005348 1.5e-39 166.4 92 84.8
Dinv29796 Davidia involucrata HOM05D004511 ORTHO05D005348 3.3e-39 165.2 93 82.8
CARHR100420 Cardamine hirsuta HOM05D004511 ORTHO05D005348 7.4e-39 164.1 93 83.9
Prupe.1G050200 Prunus persica HOM05D004511 ORTHO05D005348 7.4e-39 164.1 92 83.7
CSS0015875 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 9.7e-39 163.7 94 80.9
CSS0049524 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 9.7e-39 163.7 94 80.9
Oeu061869.1 Olea europaea HOM05D004511 ORTHO05D005348 1.7e-38 162.9 93 80.6
Solyc09g090870.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 1.7e-38 162.9 92 79.3
Haze_11476 Corylus avellana HOM05D004511 ORTHO05D005348 2.2e-38 162.5 93 82.8
Sp3g22130 Schrenkiella parvula HOM05D004511 ORTHO05D005348 2.8e-38 162.2 93 82.8
BcaC06g35683 Brassica carinata HOM05D004511 ORTHO05D005348 3.7e-38 161.8 93 82.8
A07p07990 Brassica napus HOM05D004511 ORTHO05D005348 3.7e-38 161.8 93 82.8
C07p12050 Brassica napus HOM05D004511 ORTHO05D005348 3.7e-38 161.8 93 82.8
BolC7t41673H Brassica oleracea HOM05D004511 ORTHO05D005348 3.7e-38 161.8 93 82.8
BraA07t28586Z Brassica rapa HOM05D004511 ORTHO05D005348 3.7e-38 161.8 93 82.8
MD13G1223200 Malus domestica HOM05D004511 ORTHO05D005348 3.7e-38 161.8 92 82.6
THA.LOC104821629 Tarenaya hassleriana HOM05D004511 ORTHO05D005348 3.7e-38 161.8 90 84.4
Sopen09g033830 Solanum pennellii HOM05D004511 ORTHO05D005348 4.8e-38 161.4 92 78.3
MELO3C006369.2 Cucumis melo HOM05D004511 ORTHO05D005348 6.3e-38 161.0 90 82.2
Eucgr.H02905 Eucalyptus grandis HOM05D004511 ORTHO05D005348 6.3e-38 161.0 90 83.3
Thhalv10002376m.g Eutrema salsugineum HOM05D004511 ORTHO05D005348 6.3e-38 161.0 93 82.8
Aa31LG8G11050 Aethionema arabicum HOM05D004511 ORTHO05D005348 8.2e-38 160.6 93 82.8
CAN.G524.10 Capsicum annuum HOM05D004511 ORTHO05D005348 8.2e-38 160.6 91 80.2
Manes.03G157900 Manihot esculenta HOM05D004511 ORTHO05D005348 8.2e-38 160.6 93 80.6
Sed0014740 Sechium edule HOM05D004511 ORTHO05D005348 1.1e-37 160.2 91 80.2
TAR365G1143 Trochodendron aralioides HOM05D004511 ORTHO05D005348 1.1e-37 160.2 93 80.6
Lj6A637T63 Lonicera japonica HOM05D004511 ORTHO05D005348 1.4e-37 159.8 93 79.6
Carub.0003s2466 Capsella rubella HOM05D004511 ORTHO05D005348 1.8e-37 159.5 93 82.8
CsaV3_3G011610 Cucumis sativus L. HOM05D004511 ORTHO05D005348 1.8e-37 159.5 90 81.1
Potri.010G065000 Populus trichocarpa HOM05D004511 ORTHO05D005348 1.8e-37 159.5 93 80.6
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 2.4e-37 159.1 90 83.3
Gohir.A09G230900 Gossypium hirsutum HOM05D004511 ORTHO05D005348 2.4e-37 159.1 91 81.3
Gohir.D09G232000 Gossypium hirsutum HOM05D004511 ORTHO05D005348 2.4e-37 159.1 91 81.3
Gorai.006G254800 Gossypium raimondii HOM05D004511 ORTHO05D005348 2.4e-37 159.1 91 81.3
RcHm_v2.0_Chr4g0395811 Rosa chinensis HOM05D004511 ORTHO05D005348 2.4e-37 159.1 90 82.2
GSVIVG01027931001 Vitis vinifera HOM05D004511 ORTHO05D005348 2.4e-37 159.1 93 79.6
AT3G24320 Arabidopsis thaliana HOM05D004511 ORTHO05D005348 3.1e-37 158.7 93 81.7
BcaB06g26614 Brassica carinata HOM05D004511 ORTHO05D005348 3.1e-37 158.7 93 81.7
CiPaw.01G177000 Carya illinoinensis HOM05D004511 ORTHO05D005348 3.1e-37 158.7 93 80.6
Thecc.04G266800 Theobroma cacao HOM05D004511 ORTHO05D005348 3.1e-37 158.7 91 82.4
AL3G39770 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 4.1e-37 158.3 93 81.7
Nn1g02989 Nelumbo nucifera HOM05D004511 ORTHO05D005348 4.1e-37 158.3 93 77.4
PGR004G0717 Punica granatum HOM05D004511 ORTHO05D005348 4.1e-37 158.3 110 70.9
QL06p021350 Quercus lobata HOM05D004511 ORTHO05D005348 5.3e-37 157.9 93 79.6
Ciclev10004190m.g Citrus clementina HOM05D004511 ORTHO05D005348 7.0e-37 157.5 93 79.6
SGA_v2.0_scaffold67G22677 Striga asiatica HOM05D004511 ORTHO05D005348 7.0e-37 157.5 93 76.3
Nitab4.5_0005154g0040 Nicotiana tabacum HOM05D004511 ORTHO05D005348 9.1e-37 157.1 91 76.9
Peaxi162Scf00531g00610 Petunia axillaris HOM05D004511 ORTHO05D005348 9.1e-37 157.1 91 76.9
Atru.chr4.1900 Acer truncatum HOM05D004511 ORTHO05D005348 1.2e-36 156.8 93 76.3
PSO170G1037 Papaver somniferum HOM05D004511 ORTHO05D005348 1.2e-36 156.8 99 71.7
PSO210G5810 Papaver somniferum HOM05D004511 ORTHO05D005348 1.2e-36 156.8 99 71.7
ATR0787G210 Amborella trichopoda HOM05D004511 ORTHO05D005348 1.6e-36 156.4 92 79.3
MSTRG.9851 Avicennia marina HOM05D004511 ORTHO05D005348 2.0e-36 156.0 93 77.4
FvH4_4g05000 Fragaria vesca HOM05D004511 ORTHO05D005348 2.0e-36 156.0 90 80.0
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 2.0e-36 156.0 90 80.0
FAN17G0167 Fragaria x ananassa HOM05D004511 ORTHO05D005348 2.0e-36 156.0 90 80.0
FAN22G0933 Fragaria x ananassa HOM05D004511 ORTHO05D005348 2.0e-36 156.0 90 80.0
Lsat_1_v5_gn_2_41221 Lactuca sativa HOM05D004511 ORTHO05D005348 2.0e-36 156.0 92 77.2
ECA248G2418 Erigeron canadensis HOM05D004511 ORTHO05D005348 2.6e-36 155.6 90 77.8
Cc03_g06420 Coffea canephora HOM05D004511 ORTHO05D005348 3.5e-36 155.2 90 82.2
Duzib151G0197 Durio zibethinus HOM05D004511 ORTHO05D005348 4.5e-36 154.8 91 78.0
Medtr1g045670 Medicago truncatula HOM05D004511 ORTHO05D005348 4.5e-36 154.8 90 81.1
Ca_11884_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 5.9e-36 154.5 90 80.0
Aqoxy5G00136 Aquilegia oxysepala HOM05D004511 ORTHO05D005348 7.7e-36 154.1 99 70.7
COL.COLO4_15984 Corchorus olitorius HOM05D004511 ORTHO05D005348 1.0e-35 153.7 91 78.0
Migut.G00563 Erythranthe guttata HOM05D004511 ORTHO05D005348 1.0e-35 153.7 93 75.3
arahy.Tifrunner.gnm1.ann1.QET6JI Arachis hypogaea HOM05D004511 ORTHO05D005348 1.3e-35 153.3 92 75.0
arahy.Tifrunner.gnm1.ann1.Z900IQ Arachis hypogaea HOM05D004511 ORTHO05D005348 1.3e-35 153.3 92 75.0
EL10Ac9g21855 Beta vulgaris HOM05D004511 ORTHO05D005348 1.3e-35 153.3 90 76.7
Psat6g108520 Pisum sativum HOM05D004511 ORTHO05D005348 1.7e-35 152.9 90 78.9
Hund00489 Selenicereus undatus HOM05D004511 ORTHO05D005348 2.2e-35 152.5 90 76.7
Cpa.g.sc59.13 Carica papaya HOM05D004511 ORTHO05D005348 2.9e-35 152.1 90 77.8
Psat3g154520 Pisum sativum HOM05D004511 ORTHO05D005348 2.9e-35 152.1 90 77.8
Sc11g0002730 Simmondsia chinensis HOM05D004511 ORTHO05D005348 2.9e-35 152.1 90 77.8
AUR62011461 Chenopodium quinoa HOM05D004511 ORTHO05D005348 3.8e-35 151.8 90 76.7
AUR62016594 Chenopodium quinoa HOM05D004511 ORTHO05D005348 3.8e-35 151.8 90 76.7
Ah.01g020260 Amaranthus hybridus HOM05D004511 ORTHO05D005348 5.0e-35 151.4 98 73.5
Lj6g0021678 Lotus japonicus HOM05D004511 ORTHO05D005348 5.0e-35 151.4 91 79.1
HanXRQChr06g0182821 Helianthus annuus HOM05D004511 ORTHO05D005348 8.5e-35 150.6 104 69.2
HPP92_015182 Vanilla planifolia HOM05D004511 ORTHO05D005348 1.1e-34 150.2 90 73.3
CDE02G3055 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 1.5e-34 149.8 90 74.4
CDE08G0287 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 3.2e-34 148.7 90 75.6
HanXRQChr01g0023051 Helianthus annuus HOM05D004511 ORTHO05D005348 3.2e-34 148.7 90 74.4
Phvul.007G232900 Phaseolus vulgaris HOM05D004511 ORTHO05D005348 3.2e-34 148.7 91 79.1
TPR.G17618 Trifolium pratense HOM05D004511 ORTHO05D005348 4.2e-34 148.3 90 75.6
SEGI_11740 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 9.4e-34 147.1 99 67.7
SEGI_15545 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 9.4e-34 147.1 99 67.7
VMungo0720G0394 Vigna mungo HOM05D004511 ORTHO05D005348 1.2e-33 146.7 91 78.0
Lalb_Chr02g0150721 Lupinus albus HOM05D004511 ORTHO05D005348 1.6e-33 146.4 91 74.7
Ca_28143_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 2.7e-33 145.6 90 76.7
Ca_21499_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 3.6e-33 145.2 90 75.6
Lj6g0008121 Lotus japonicus HOM05D004511 ORTHO05D005348 6.1e-33 144.4 92 73.9
Glyma.20G073400 Glycine max HOM05D004511 ORTHO05D005348 1.0e-32 143.7 91 78.0
Ca_07387_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.8e-32 142.9 90 74.4
Glyma.10G130700 Glycine max HOM05D004511 ORTHO05D005348 1.8e-32 142.9 91 75.8
Ca_07386_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 5.2e-32 141.4 90 74.4
Ca_12270_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 5.2e-32 141.4 90 74.4
Os04g0507000 Oryza sativa ssp. japonica HOM05D004511 ORTHO05D005348 1.5e-31 139.8 101 64.4
unitig_747.g21672 Utricularia gibba HOM05D004511 ORTHO05D005348 3.7e-30 135.2 80 78.8
Mapoly0067s0046 Marchantia polymorpha HOM05D004511 ORTHO05D005348 2.0e-23 112.8 100 53.0
SMO364G0324 Selaginella moellendorffii HOM05D004511 ORTHO05D005348 2.0e-23 112.8 86 60.5
Pp3c8_22090 Physcomitrium patens HOM05D004511 ORTHO05D005348 4.4e-23 111.7 90 60.0
Pp3c23_17640 Physcomitrium patens HOM05D004511 ORTHO05D005348 9.8e-23 110.5 90 57.8
CBR_g22305 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-19 98.6 90 54.4
MCO07G727 Micromonas commoda HOM05D004511 ORTHO05D005348 1.4e-13 80.1 87 47.1
PRCOL_00002937 Prasinoderma coloniale HOM05D004511 ORTHO05D005348 2.0e-12 76.3 89 38.2
Cre06.g250850 Chlamydomonas reinhardtii HOM05D004511 ORTHO05D005348 4.7e-09 65.1 113 38.1
Psat4g091920 Pisum sativum HOM05D004511 ORTHO05D005348 1.0e-08 63.9 41 73.2
SalBow3G2997 Salvia bowleyana HOM05D001061 ORTHO05D006808 1.3e-06 57.0 91 36.3
Migut.D00086 Erythranthe guttata HOM05D001061 ORTHO05D006808 4.9e-06 55.1 91 35.2
unitig_85.g27181 Utricularia gibba HOM05D001061 ORTHO05D006808 4.9e-06 55.1 85 37.6
PSO063G0257 Papaver somniferum HOM05D001061 ORTHO05D007103 6.4e-06 54.7 95 30.5
PRCOL_00003897 Prasinoderma coloniale HOM05D001061 ORTHO05D006808 6.4e-06 54.7 87 39.1
PGR102G2005 Punica granatum HOM05D001061 ORTHO05D007103 6.4e-06 54.7 102 34.3


User provided reference genes

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