Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 9.0e-134 480.3 255 100.0
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 3.8e-132 474.9 255 98.8
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 2.6e-88 329.3 259 71.0
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 3.6e-82 308.9 263 68.8
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 4.7e-82 308.5 255 65.9
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 8.0e-82 307.8 259 68.3
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 2.0e-77 293.1 259 63.7
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 2.1e-74 283.1 266 61.3
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 1.5e-72 276.9 267 60.3
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 1.3e-71 273.9 263 60.1
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 1.7e-71 273.5 260 62.3
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 2.2e-71 273.1 263 60.1
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 3.7e-71 272.3 263 59.7
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 6.3e-71 271.6 262 60.3
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 1.6e-69 266.9 253 60.9
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 2.0e-69 266.5 267 58.8
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 7.8e-69 264.6 298 54.7
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 1.3e-68 263.8 264 58.3
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 2.9e-68 262.7 253 61.3
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 1.9e-67 260.0 291 54.6
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 5.8e-64 248.4 262 57.6
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 2.2e-63 246.5 260 58.5
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 6.4e-63 245.0 261 57.1
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 8.3e-63 244.6 261 57.5
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 1.4e-62 243.8 262 57.3
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 1.9e-62 243.4 250 57.6
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 2.4e-62 243.0 261 57.5
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 3.2e-62 242.7 248 58.1
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 6.0e-61 238.4 262 55.7
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 6.0e-61 238.4 261 55.2
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 1.3e-60 237.3 262 54.2
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 3.0e-60 236.1 262 53.8
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 5.0e-60 235.3 262 53.8
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.1e-59 234.2 262 53.4
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 1.5e-59 233.8 260 55.4
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 1.9e-59 233.4 263 55.9
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 5.6e-59 231.9 261 54.8
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 5.6e-59 231.9 262 55.0
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 2.8e-58 229.6 258 55.8
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 3.6e-58 229.2 251 55.8
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 6.2e-58 228.4 262 53.1
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 8.1e-58 228.0 265 54.0
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 2.3e-57 226.5 261 53.6
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 3.1e-57 226.1 254 53.9
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 4.0e-57 225.7 261 54.8
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 5.2e-57 225.3 264 54.2
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.2e-56 224.2 261 54.4
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 1.5e-56 223.8 264 54.5
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 2.6e-56 223.0 264 53.4
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 3.7e-55 219.2 273 51.6
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 3.7e-55 219.2 261 51.3
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 2.4e-54 216.5 258 51.2
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 3.2e-54 216.1 260 55.0
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 7.1e-54 214.9 262 52.7
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 9.2e-54 214.5 252 53.6
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 1.2e-53 214.2 265 51.7
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 1.2e-53 214.2 260 54.6
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 1.2e-53 214.2 268 52.6
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 2.1e-53 213.4 251 53.4
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 2.7e-53 213.0 261 51.3
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 2.7e-53 213.0 261 51.3
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 6.6e-52 208.4 264 51.9
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 4.3e-51 205.7 264 51.9
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 7.3e-51 204.9 260 50.0
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 7.3e-51 204.9 263 50.6
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 7.3e-51 204.9 256 50.0
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 9.5e-51 204.5 261 51.3
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 9.5e-51 204.5 257 49.4
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 1.2e-50 204.1 265 49.8
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 2.8e-50 203.0 263 51.0
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 2.3e-49 199.9 257 49.4
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 3.1e-49 199.5 256 48.8
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 4.0e-49 199.1 261 50.2
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 4.0e-49 199.1 255 51.4
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 6.8e-49 198.4 303 45.9
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 2.6e-48 196.4 256 48.8
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 9.9e-48 194.5 257 51.4
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 1.7e-47 193.7 262 50.0
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 1.7e-47 193.7 261 48.3
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 4.1e-46 189.1 255 47.8
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 5.4e-46 188.7 258 46.9
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 3.5e-45 186.0 256 47.3
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 3.5e-45 186.0 295 45.4
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 1.5e-43 180.6 257 47.5
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 3.3e-43 179.5 250 48.8
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 4.3e-43 179.1 251 48.6
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 9.6e-43 177.9 256 44.5
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 6.2e-42 175.3 264 44.7
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 8.1e-42 174.9 258 47.3
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 2.0e-40 170.2 262 46.6
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 4.6e-37 159.1 261 45.2
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 8.7e-36 154.8 263 43.0
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 1.5e-35 154.1 215 49.8
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 1.6e-34 150.6 297 37.4
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.4e-33 147.5 183 51.9
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 6.9e-33 145.2 205 51.2
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 4.4e-32 142.5 241 41.9
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.8e-31 139.4 183 50.3
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 1.2e-29 134.4 115 60.0
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 6.6e-28 128.6 287 35.5
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 1.9e-27 127.1 212 44.8
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 5.6e-27 125.6 102 59.8
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 1.3e-26 124.4 280 34.3
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 2.1e-26 123.6 291 35.7
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.9e-23 113.2 150 48.7
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.6e-21 107.5 178 45.5
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 2.3e-20 103.6 70 70.0
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 6.7e-20 102.1 333 30.0
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 4.3e-19 99.4 183 42.1
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 5.6e-19 99.0 70 67.1
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 1.3e-18 97.8 250 38.0
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 1.6e-18 97.4 146 47.9
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.4e-17 93.6 141 47.5
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.4e-17 93.6 141 47.5
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 6.9e-17 92.0 145 44.1
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.9e-14 84.0 200 37.0
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 2.6e-08 63.5 85 50.6
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 5.5e-06 55.8 120 44.2
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 7.2e-06 55.5 91 47.3


User provided reference genes

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