Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 5.2e-92 341.3 204 100.0
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.5e-86 323.2 204 94.6
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 2.5e-86 322.4 204 96.1
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 2.2e-82 309.3 204 91.2
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 4.9e-82 308.1 205 91.7
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 6.0e-80 301.2 204 87.7
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.0e-79 300.4 205 89.3
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 2.3e-79 299.3 204 87.7
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.1e-78 297.0 205 88.8
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 2.5e-78 295.8 204 87.7
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 2.5e-78 295.8 204 87.7
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.2e-77 293.5 204 86.8
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 2.1e-77 292.7 205 85.9
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.1e-76 290.4 204 87.3
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 3.1e-76 288.9 204 85.3
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 6.8e-76 287.7 204 85.3
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 1.2e-75 287.0 204 83.8
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 2.0e-75 286.2 204 87.3
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.6e-75 285.8 205 86.8
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 4.4e-75 285.0 204 84.8
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 5.8e-75 284.6 203 83.3
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 5.8e-75 284.6 201 88.1
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 5.8e-75 284.6 195 90.8
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 5.8e-75 284.6 204 86.3
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 7.6e-75 284.3 203 83.7
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 7.6e-75 284.3 204 84.8
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 7.6e-75 284.3 204 84.8
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.3e-74 283.5 204 84.3
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 1.7e-74 283.1 204 84.3
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 4.9e-74 281.6 201 87.6
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 6.4e-74 281.2 202 82.7
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.4e-73 280.0 196 86.2
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 3.2e-73 278.9 205 84.4
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 3.2e-73 278.9 247 72.5
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 4.2e-73 278.5 204 81.4
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 4.2e-73 278.5 200 85.5
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 7.1e-73 277.7 204 81.9
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 7.1e-73 277.7 204 81.9
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 7.1e-73 277.7 203 82.3
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.2e-72 276.9 204 79.4
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.2e-72 276.9 199 82.4
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.6e-72 276.6 205 84.9
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 2.1e-72 276.2 200 84.0
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 7.8e-72 274.2 204 82.8
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 1.0e-71 273.9 204 82.8
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.7e-71 273.1 204 84.3
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 2.3e-71 272.7 200 84.5
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 2.3e-71 272.7 204 83.3
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 2.3e-71 272.7 200 86.0
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 3.0e-71 272.3 199 83.4
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 3.9e-71 271.9 200 82.5
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 6.6e-71 271.2 205 83.4
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 6.6e-71 271.2 200 83.0
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 6.6e-71 271.2 196 82.7
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 8.7e-71 270.8 196 87.2
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 8.7e-71 270.8 201 78.1
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.5e-70 269.2 206 81.1
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.3e-70 268.9 204 80.4
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.3e-70 268.9 200 82.5
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 3.3e-70 268.9 200 82.5
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 4.3e-70 268.5 204 80.9
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 5.6e-70 268.1 204 82.4
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.3e-69 266.9 200 81.0
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 2.1e-69 266.2 199 80.9
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.1e-69 266.2 205 83.4
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 8.1e-69 264.2 199 79.4
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 8.1e-69 264.2 206 81.6
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 8.1e-69 264.2 205 82.9
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 8.1e-69 264.2 209 80.4
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.1e-68 263.8 209 80.4
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.4e-68 263.5 201 82.6
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 1.8e-68 263.1 205 79.0
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 2.4e-68 262.7 198 78.8
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.4e-68 262.7 209 79.9
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 2.4e-68 262.7 198 79.3
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.1e-68 262.3 204 80.9
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 5.3e-68 261.5 200 82.5
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 5.3e-68 261.5 203 78.3
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 6.9e-68 261.2 205 75.6
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.5e-67 260.0 205 71.7
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.5e-67 260.0 201 82.6
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 2.0e-67 259.6 200 83.0
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 4.4e-67 258.5 199 78.4
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 5.8e-67 258.1 206 78.6
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 5.8e-67 258.1 207 80.7
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 5.8e-67 258.1 199 80.4
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 9.9e-67 257.3 199 78.9
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 4.9e-66 255.0 200 81.0
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 8.4e-66 254.2 199 77.9
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 3.2e-65 252.3 199 77.9
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 7.1e-65 251.1 200 79.5
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 7.1e-65 251.1 200 79.5
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.7e-64 249.2 199 76.4
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 2.7e-64 249.2 199 76.4
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 3.5e-64 248.8 199 79.4
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.0e-63 245.7 202 75.7
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 5.1e-63 245.0 199 74.4
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 2.5e-62 242.7 204 76.5
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.6e-62 241.5 150 82.7
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 7.4e-62 241.1 197 76.6
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 2.8e-61 239.2 170 87.6
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 8.1e-61 237.7 195 78.5
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.4e-60 236.9 151 79.5
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 9.0e-60 234.2 168 86.3
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 9.9e-59 230.7 198 76.3
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 9.9e-59 230.7 276 58.7
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 1.7e-58 229.9 211 61.6
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.9e-57 226.5 296 57.4
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.1e-56 223.0 196 75.0
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.8e-55 219.9 149 73.2
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.8e-55 219.9 204 73.0
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.3e-55 219.5 203 68.0
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 6.7e-55 218.0 214 59.8
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 8.1e-53 211.1 145 71.7
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.4e-52 210.3 204 64.2
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 1.8e-52 209.9 224 69.6
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.0e-51 206.5 136 75.7
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 9.3e-49 197.6 111 86.5
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 6.9e-44 181.4 174 71.8
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.5e-43 180.3 148 68.9
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.1e-40 168.3 212 64.2
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.8e-39 166.8 123 87.8
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 3.0e-39 166.0 144 63.9
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 8.7e-39 164.5 222 46.8
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 8.2e-37 157.9 126 69.8
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 3.4e-35 152.5 285 49.8
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 2.1e-32 143.3 228 52.2
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.4e-31 140.6 198 46.0
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 2.1e-24 116.7 214 46.7
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.4e-22 109.0 155 46.5
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 2.2e-18 96.7 96 75.0
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 4.7e-16 89.0 211 36.5
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 1.8e-15 87.0 91 74.7
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 5.9e-11 72.0 46 76.1
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 5.0e-10 68.9 159 27.7


User provided reference genes

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