Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 3.3e-284 981.1 523 100.0
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.2e-188 663.7 420 84.3
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 1.4e-173 613.6 414 79.0
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 8.5e-171 604.4 417 80.6
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.9e-170 603.2 413 77.7
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 5.5e-170 601.7 420 79.8
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 1.3e-166 590.5 416 80.0
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.4e-165 587.0 418 76.6
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.3e-165 585.1 416 78.1
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 6.9e-165 584.7 413 78.0
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 2.0e-164 583.2 422 77.3
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 4.2e-162 575.5 419 75.2
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 2.1e-161 573.2 421 74.3
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.7e-161 572.8 425 73.4
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 4.7e-161 572.0 416 74.3
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 8.0e-161 571.2 417 74.8
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.8e-160 570.1 418 76.1
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 3.9e-160 568.9 396 79.0
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 4.4e-159 565.5 418 74.2
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 5.7e-159 565.1 423 75.7
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.3e-158 563.9 418 73.9
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.7e-158 563.5 418 73.9
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 2.2e-158 563.1 417 74.3
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 3.7e-158 562.4 431 71.7
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 3.7e-158 562.4 419 75.7
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 4.8e-158 562.0 418 75.8
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 2.4e-157 559.7 419 73.7
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 3.1e-157 559.3 421 74.6
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.6e-156 557.0 413 76.5
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 3.5e-156 555.8 422 74.4
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.5e-156 555.4 419 73.5
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 5.9e-156 555.1 418 73.0
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.7e-155 553.5 418 75.8
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 5.0e-155 552.0 417 71.5
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 8.5e-155 551.2 423 71.6
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 2.5e-154 549.7 416 74.3
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 4.7e-153 545.4 420 74.0
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 1.0e-152 544.3 415 75.7
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 1.8e-152 543.5 430 73.7
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.8e-152 543.5 418 72.7
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 2.3e-152 543.1 418 74.4
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 2.3e-152 543.1 416 74.0
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 4.0e-152 542.3 430 73.5
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 4.0e-152 542.3 419 73.5
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 1.2e-151 540.8 418 72.2
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.0e-151 540.0 430 73.5
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 5.7e-151 538.5 400 76.2
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 5.7e-151 538.5 418 71.5
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 5.7e-151 538.5 426 72.1
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 7.5e-151 538.1 422 71.6
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 9.7e-151 537.7 428 71.3
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 9.7e-151 537.7 424 70.8
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.8e-149 533.5 434 70.5
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 2.4e-149 533.1 422 71.8
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 2.4e-149 533.1 418 74.2
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 1.6e-148 530.4 416 72.8
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 4.5e-148 528.9 434 69.1
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 5.0e-147 525.4 423 70.0
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 4.2e-146 522.3 423 70.7
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 2.6e-143 513.1 426 69.0
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 4.4e-143 512.3 417 67.9
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 9.8e-143 511.1 423 67.8
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 4.8e-142 508.8 419 67.3
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 2.4e-141 506.5 423 66.4
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 3.1e-141 506.1 432 65.5
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 1.6e-140 503.8 396 71.7
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 7.7e-140 501.5 418 69.1
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 3.8e-139 499.2 417 70.7
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 3.3e-138 496.1 395 69.9
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 7.2e-138 495.0 420 68.6
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 3.0e-136 489.6 413 67.3
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 4.0e-136 489.2 420 68.3
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 4.0e-136 489.2 335 77.6
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 8.9e-136 488.0 335 77.0
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 2.6e-135 486.5 425 67.1
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 1.2e-132 477.6 387 67.2
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 2.0e-132 476.9 327 78.0
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.7e-131 473.8 323 77.7
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 2.9e-131 473.0 418 66.0
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.5e-130 470.7 418 63.6
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 1.6e-129 467.2 442 60.4
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.3e-128 463.4 436 63.5
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 6.8e-128 461.8 424 61.3
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 1.2e-127 461.1 421 66.0
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 2.0e-127 460.3 416 63.5
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.6e-127 459.9 418 65.3
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 4.4e-127 459.1 413 63.4
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 5.8e-127 458.8 440 59.5
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 7.5e-127 458.4 418 63.2
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.2e-126 456.8 427 64.2
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 3.7e-126 456.1 423 64.1
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 6.4e-126 455.3 427 64.6
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 6.4e-126 455.3 427 64.6
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 8.3e-126 454.9 421 65.6
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.9e-125 453.8 427 64.6
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 2.0e-124 450.3 413 62.2
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 2.7e-124 449.9 412 62.4
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 4.6e-124 449.1 420 60.0
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 6.0e-124 448.7 413 62.7
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 2.8e-121 439.9 395 63.0
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 2.3e-120 436.8 405 65.7
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.7e-113 412.5 376 61.7
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.2e-112 409.1 412 58.7
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.8e-112 408.7 376 60.4
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 2.6e-111 406.8 395 60.8
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 1.7e-102 377.5 281 78.6
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.4e-101 374.4 445 54.2
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.4e-101 374.4 412 55.3
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 1.3e-99 367.9 222 82.4
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 1.3e-99 367.9 414 53.4
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 2.1e-97 360.5 432 52.1
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 4.3e-90 336.3 442 48.2
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 9.6e-90 335.1 290 64.5
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 3.5e-84 316.6 340 55.9
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 3.9e-83 313.2 351 54.4
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.3e-82 310.1 372 51.6
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.0e-75 288.5 282 61.7
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 1.1e-72 278.5 167 82.6
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 6.9e-72 275.8 160 86.9
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 6.5e-70 269.2 339 53.4
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 2.0e-58 231.1 137 84.7
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 8.2e-57 225.7 158 69.6
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 5.0e-54 216.5 115 89.6
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 6.3e-49 199.5 168 60.7
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 1.4e-48 198.4 254 51.2
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.4e-45 188.3 115 82.6
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.2e-44 185.3 286 47.2
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 2.7e-44 184.1 159 59.7
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 6.7e-43 179.5 121 71.9
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 1.0e-38 165.6 156 53.2
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 4.7e-36 156.8 175 55.4
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 1.1e-32 145.6 422 32.0
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 5.0e-30 136.7 158 55.7
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 3.2e-29 134.0 155 56.1
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.4e-27 128.6 64 90.6
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.0e-27 127.1 64 89.1
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 4.0e-27 127.1 64 89.1
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 5.2e-27 126.7 150 55.3
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.0e-26 124.8 114 57.0
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.0e-26 124.8 64 87.5
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 5.4e-24 116.7 72 79.2
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 7.7e-23 112.8 68 80.9
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 3.8e-22 110.5 97 59.8
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 1.9e-21 108.2 66 78.8
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.9e-21 108.2 68 77.9
SGA_v2.0_scaffold15G07395 Striga asiatica HOM05D001948 ORTHO05D001873 2.5e-21 107.8 54 98.1
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 9.8e-18 95.9 97 70.1
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.6e-15 88.6 108 47.2
SGA_v2.0_scaffold275G46575 Striga asiatica HOM05D001948 ORTHO05D404134 6.1e-12 76.6 48 81.2
SGA_v2.0_scaffold21G09423 Striga asiatica HOM05D001046 ORTHO05D005883 8.9e-11 72.8 97 53.6
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 1.4e-08 65.5 74 48.6
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 1.4e-08 65.5 74 48.6
Actinidia10913 Actinidia chinensis HOM05D004820 ORTHO05D005946 1.6e-07 62.0 38 84.2


User provided reference genes

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