Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 6.8e-92 340.9 204 100.0
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.1e-86 323.6 204 94.6
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.2e-85 320.1 204 94.1
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 1.7e-82 309.7 204 90.7
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.2e-80 303.5 204 88.2
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 2.7e-80 302.4 204 87.3
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 3.5e-80 302.0 205 90.2
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 3.9e-79 298.5 205 88.3
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.2e-77 293.5 204 85.8
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.6e-77 293.1 204 85.8
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.6e-77 293.1 204 85.8
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 3.6e-77 292.0 205 86.8
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 3.6e-77 292.0 205 85.9
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 5.2e-76 288.1 205 86.8
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 8.9e-76 287.3 204 83.8
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 1.2e-75 287.0 204 83.3
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 2.0e-75 286.2 203 83.3
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 2.6e-75 285.8 204 85.3
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 4.4e-75 285.0 204 83.8
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 5.8e-75 284.6 204 84.3
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 7.6e-75 284.3 204 85.8
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 7.6e-75 284.3 204 83.3
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 1.3e-74 283.5 203 82.8
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 2.2e-74 282.7 202 86.1
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.2e-74 282.7 202 83.7
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 2.9e-74 282.3 204 85.3
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 2.9e-74 282.3 204 83.3
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 3.8e-74 282.0 204 83.3
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 6.4e-74 281.2 204 82.8
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.4e-73 280.0 195 88.2
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 1.9e-73 279.6 202 86.1
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.9e-73 279.6 205 83.9
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 4.2e-73 278.5 194 85.6
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 7.1e-73 277.7 204 80.9
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 7.1e-73 277.7 200 82.0
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 9.3e-73 277.3 204 81.4
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 9.3e-73 277.3 204 81.4
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.2e-72 276.9 203 81.3
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 2.1e-72 276.2 204 78.9
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 7.8e-72 274.2 201 83.1
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 7.8e-72 274.2 204 82.4
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 7.8e-72 274.2 201 79.6
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.0e-71 273.9 201 82.6
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.0e-71 273.9 247 70.9
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 1.7e-71 273.1 206 81.6
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.7e-71 273.1 204 81.4
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.3e-71 272.7 204 83.8
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 5.1e-71 271.6 201 81.6
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 6.6e-71 271.2 205 83.4
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 6.6e-71 271.2 196 82.1
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 8.7e-71 270.8 204 82.8
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 8.7e-71 270.8 202 84.2
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.1e-70 270.4 196 86.7
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.5e-70 270.0 201 82.1
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 1.5e-70 270.0 201 82.1
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.5e-70 270.0 204 80.9
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.5e-70 270.0 201 82.1
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 4.3e-70 268.5 200 81.5
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 5.6e-70 268.1 204 80.9
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 5.6e-70 268.1 201 82.1
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 5.6e-70 268.1 201 81.6
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 2.1e-69 266.2 200 79.5
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 2.1e-69 266.2 201 80.1
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.8e-69 265.8 205 82.0
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 2.8e-69 265.8 205 79.5
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 6.2e-69 264.6 198 78.3
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 8.1e-69 264.2 200 78.0
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.1e-68 263.8 206 81.1
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 1.8e-68 263.1 203 78.3
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 3.1e-68 262.3 205 72.2
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 5.3e-68 261.5 201 81.1
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 9.0e-68 260.8 201 81.6
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 9.0e-68 260.8 205 82.0
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.2e-67 260.4 204 79.4
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 1.5e-67 260.0 198 77.8
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.5e-67 260.0 200 79.5
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.5e-67 260.0 201 81.1
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.0e-67 259.6 210 78.1
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.6e-67 259.2 210 78.1
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 3.4e-67 258.8 205 81.5
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 3.4e-67 258.8 199 80.4
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.8e-67 258.1 210 77.6
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.7e-66 256.5 202 80.2
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.7e-66 256.5 201 81.1
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 2.2e-66 256.1 207 78.7
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 3.8e-66 255.4 200 78.5
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 3.8e-66 255.4 200 76.5
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 3.8e-66 255.4 205 74.1
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 1.1e-65 253.8 200 81.0
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 1.1e-65 253.8 200 81.0
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 4.2e-65 251.9 200 76.0
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 5.4e-65 251.5 200 76.5
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.1e-64 249.6 200 75.5
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 7.9e-64 247.7 200 78.5
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.7e-63 246.5 204 77.9
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 3.9e-63 245.4 200 73.5
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 6.6e-63 244.6 199 74.4
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.9e-62 243.0 203 74.4
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 3.3e-62 242.3 204 74.5
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.6e-61 240.0 151 80.8
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 2.1e-61 239.6 170 87.1
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.1e-60 237.3 195 77.9
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.8e-60 236.5 168 86.3
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 6.9e-60 234.6 152 77.6
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.5e-59 233.4 197 77.2
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 3.4e-59 232.3 212 61.3
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 7.6e-59 231.1 276 57.6
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.2e-57 225.7 294 57.1
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 4.2e-57 225.3 204 74.0
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.8e-55 219.9 149 73.2
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.5e-54 216.9 196 73.0
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.5e-54 216.9 203 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.1e-53 213.0 146 71.9
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 3.7e-53 212.2 214 57.5
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 9.0e-52 207.6 224 68.8
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.6e-51 206.1 136 75.7
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 2.9e-50 202.6 203 62.6
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 1.2e-48 197.2 110 86.4
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.1e-45 186.4 161 75.8
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.5e-43 178.7 148 67.6
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.0e-39 167.5 123 87.8
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.3e-39 167.2 212 62.7
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.9e-38 163.3 224 45.5
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 2.5e-38 162.9 144 62.5
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.1e-36 157.5 126 69.0
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.4e-33 147.1 285 48.8
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 8.8e-31 137.9 227 50.7
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.1e-30 137.5 198 44.9
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.1e-22 110.9 213 44.6
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.8e-21 106.3 155 45.2
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 5.9e-19 98.6 96 76.0
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 3.6e-16 89.4 214 36.9
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 6.1e-16 88.6 91 75.8
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.2e-11 74.3 164 30.5
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 2.0e-11 73.6 46 78.3


User provided reference genes

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