Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold76G25121 Striga asiatica HOM05D005767 ORTHO05D006785 0.0e+00 1260.4 618 100.0
Migut.N01741 Erythranthe guttata HOM05D005767 ORTHO05D006785 2.8e-253 878.6 619 72.1
MSTRG.23406 Avicennia marina HOM05D005767 ORTHO05D006785 4.9e-250 867.8 619 71.9
Cc07_g10770 Coffea canephora HOM05D005767 ORTHO05D006785 5.8e-211 738.0 623 61.5
Manes.01G146000 Manihot esculenta HOM05D005767 ORTHO05D006785 6.4e-210 734.6 636 58.5
CSS0010624 Camellia sinensis var. sinensis HOM05D005767 ORTHO05D006785 1.1e-206 723.8 632 60.1
Dinv33631 Davidia involucrata HOM05D005767 ORTHO05D006785 1.4e-204 716.8 634 60.1
Ciclev10025146m.g Citrus clementina HOM05D005767 ORTHO05D006785 2.1e-200 703.0 656 57.6
TAR376G0924 Trochodendron aralioides HOM05D005767 ORTHO05D006785 3.9e-199 698.7 647 57.8
DCAR_026000 Daucus carota HOM05D005767 ORTHO05D006785 1.9e-198 696.4 632 58.4
Nitab4.5_0006119g0040 Nicotiana tabacum HOM05D005767 ORTHO05D006785 5.6e-198 694.9 621 59.6
Thecc.01G018100 Theobroma cacao HOM05D005767 ORTHO05D006785 2.1e-197 693.0 637 58.1
Atru.chr3.804 Acer truncatum HOM05D005767 ORTHO05D006785 3.1e-196 689.1 635 57.6
COL.COLO4_21902 Corchorus olitorius HOM05D005767 ORTHO05D006785 1.5e-195 686.8 635 57.8
Nn1g05917 Nelumbo nucifera HOM05D005767 ORTHO05D006785 7.6e-195 684.5 644 56.5
Prupe.7G168600 Prunus persica HOM05D005767 ORTHO05D006785 1.7e-194 683.3 637 57.5
CAN.G1735.5 Capsicum annuum HOM05D005767 ORTHO05D006785 2.2e-194 682.9 628 58.8
FvH4_1g11761 Fragaria vesca HOM05D005767 ORTHO05D006785 2.2e-194 682.9 624 57.7
ECA232G4495 Erigeron canadensis HOM05D005767 ORTHO05D006785 2.9e-194 682.6 619 57.2
QL06p032910 Quercus lobata HOM05D005767 ORTHO05D006785 4.9e-194 681.8 631 57.1
Nitab4.5_0000438g0060 Nicotiana tabacum HOM05D005767 ORTHO05D006785 6.4e-194 681.4 639 57.7
VMungo0251G0680 Vigna mungo HOM05D005767 ORTHO05D006785 6.4e-194 681.4 633 56.4
HanXRQChr09g0256711 Helianthus annuus HOM05D005767 ORTHO05D006785 9.3e-193 677.6 624 56.7
Lsat_1_v5_gn_4_144841 Lactuca sativa HOM05D005767 ORTHO05D006785 1.6e-192 676.8 620 57.3
Potri.007G057400 Populus trichocarpa HOM05D005767 ORTHO05D006785 1.6e-192 676.8 639 56.0
RcHm_v2.0_Chr2g0099381 Rosa chinensis HOM05D005767 ORTHO05D006785 1.6e-192 676.8 630 57.1
FAN19G2575 Fragaria x ananassa HOM05D005767 ORTHO05D006785 3.5e-192 675.6 624 57.1
MD02G1131900 Malus domestica HOM05D005767 ORTHO05D006785 4.6e-192 675.2 632 56.8
Gorai.007G194300 Gossypium raimondii HOM05D005767 ORTHO05D006785 7.9e-192 674.5 660 56.5
CiPaw.07G058900 Carya illinoinensis HOM05D005767 ORTHO05D006785 1.3e-191 673.7 617 57.4
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 5.6e-190 668.3 717 51.7
Sopen03g006310 Solanum pennellii HOM05D005767 ORTHO05D006785 9.6e-190 667.5 627 57.4
Sed0019779 Sechium edule HOM05D005767 ORTHO05D006785 2.8e-189 666.0 621 55.7
Peaxi162Scf00050g00215 Petunia axillaris HOM05D005767 ORTHO05D006785 1.1e-188 664.1 618 57.3
CsaV3_6G047130 Cucumis sativus L. HOM05D005767 ORTHO05D006785 1.4e-188 663.7 635 55.6
Gohir.A11G175000 Gossypium hirsutum HOM05D005767 ORTHO05D006785 2.4e-188 662.9 658 55.9
MELO3C007906.2 Cucumis melo HOM05D005767 ORTHO05D006785 1.5e-187 660.2 629 55.0
Lj4g0015609 Lotus japonicus HOM05D005767 ORTHO05D006785 4.5e-187 658.7 629 55.5
Cpa.g.sc6.256 Carica papaya HOM05D005767 ORTHO05D006785 7.6e-187 657.9 634 57.1
TPR.G27975 Trifolium pratense HOM05D005767 ORTHO05D006785 7.6e-187 657.9 631 56.3
Medtr8g075810 Medicago truncatula HOM05D005767 ORTHO05D006785 1.0e-186 657.5 627 55.5
Sc16g0002260 Simmondsia chinensis HOM05D005767 ORTHO05D006785 1.9e-185 653.3 629 55.2
Psat4g100320 Pisum sativum HOM05D005767 ORTHO05D006785 9.3e-185 651.0 623 55.2
Sabra07G0049300 Salix brachista HOM05D005767 ORTHO05D006785 4.6e-184 648.7 670 53.0
AUR62003364 Chenopodium quinoa HOM05D005767 ORTHO05D006785 7.9e-184 647.9 625 54.9
Ca_22378_v3 Cicer arietinum L. HOM05D005767 ORTHO05D006785 7.9e-184 647.9 631 55.3
Sp7g33830 Schrenkiella parvula HOM05D005767 ORTHO05D006785 5.1e-183 645.2 623 53.5
arahy.Tifrunner.gnm1.ann1.G0D851 Arachis hypogaea HOM05D005767 ORTHO05D006785 8.7e-183 644.4 624 54.8
arahy.Tifrunner.gnm1.ann1.12F6XV Arachis hypogaea HOM05D005767 ORTHO05D006785 2.5e-182 642.9 621 54.6
ClCG01G020330 Citrullus lanatus HOM05D005767 ORTHO05D006785 4.3e-182 642.1 694 51.6
TWI73G0295 Tripterygium wilfordii HOM05D005767 ORTHO05D006785 1.8e-180 636.7 636 54.4
Duzib147G1641 Durio zibethinus HOM05D005767 ORTHO05D006785 4.1e-180 635.6 633 55.0
AT4G36050 Arabidopsis thaliana HOM05D005767 ORTHO05D006785 5.3e-180 635.2 632 52.8
Rhsim10G0211700 Rhododendron simsii HOM05D005767 ORTHO05D006785 5.3e-180 635.2 622 56.8
Ah.03g148810 Amaranthus hybridus HOM05D005767 ORTHO05D006785 1.5e-179 633.6 628 53.5
Solyc03g033530.4 Solanum lycopersicum HOM05D005767 ORTHO05D006785 2.6e-179 632.9 595 58.0
Thhalv10024709m.g Eutrema salsugineum HOM05D005767 ORTHO05D006785 2.9e-178 629.4 627 52.6
PGR119G2148 Punica granatum HOM05D005767 ORTHO05D006785 8.5e-178 627.9 626 54.5
Glyma.02G048200 Glycine max HOM05D005767 ORTHO05D006785 1.1e-177 627.5 636 54.2
PSO541G2118 Papaver somniferum HOM05D005767 ORTHO05D006785 2.5e-177 626.3 638 53.0
AUR62029469 Chenopodium quinoa HOM05D005767 ORTHO05D006785 3.2e-177 625.9 598 56.0
Phvul.003G261600 Phaseolus vulgaris HOM05D005767 ORTHO05D006785 3.2e-177 625.9 634 55.2
Aa31LG6G13010 Aethionema arabicum HOM05D005767 ORTHO05D006785 7.2e-177 624.8 623 52.6
Carub.0007s0418 Capsella rubella HOM05D005767 ORTHO05D006785 2.7e-176 622.9 633 52.3
unitig_32.g10945 Utricularia gibba HOM05D005767 ORTHO05D006785 3.6e-176 622.5 618 53.4
AL7G15000 Arabidopsis lyrata HOM05D005767 ORTHO05D006785 4.3e-174 615.5 629 51.4
vmacro22135 Vaccinium macrocarpon HOM05D005767 ORTHO05D006785 7.4e-174 614.8 629 55.3
Hund16493 Selenicereus undatus HOM05D005767 ORTHO05D006785 1.4e-172 610.5 603 54.9
Aqoxy6G02211 Aquilegia oxysepala HOM05D005767 ORTHO05D006785 1.5e-171 607.1 625 52.6
Lj2C469G1 Lonicera japonica HOM05D005767 ORTHO05D006785 1.2e-168 597.4 551 58.1
C01p02980 Brassica napus HOM05D005767 ORTHO05D006785 3.0e-167 592.8 624 51.4
FAN26G3405 Fragaria x ananassa HOM05D005767 ORTHO05D006785 6.3e-165 585.1 600 52.8
Oeu035312.2 Olea europaea HOM05D005767 ORTHO05D006785 5.9e-163 578.6 462 65.4
BraA01t00254Z Brassica rapa HOM05D005767 ORTHO05D006785 5.5e-161 572.0 600 51.8
HPP92_005447 Vanilla planifolia HOM05D005767 ORTHO05D006785 2.1e-160 570.1 649 48.4
BolC1t00284H Brassica oleracea HOM05D005767 ORTHO05D006785 4.7e-160 568.9 636 48.4
GSVIVG01018776001 Vitis vinifera HOM05D005767 ORTHO05D006785 4.7e-160 568.9 403 69.0
BcaNung00769 Brassica carinata HOM05D005767 ORTHO05D006785 6.7e-159 565.1 622 49.7
A01p02680 Brassica napus HOM05D005767 ORTHO05D006785 2.8e-157 559.7 602 50.0
SHI08521 Sapria himalayana HOM05D000565 ORTHO05D002009 3.5e-155 552.7 582 51.0
CDE04G0100 Ceratophyllum demersum HOM05D005767 ORTHO05D006785 8.5e-154 548.1 633 48.8
Gohir.D11G182500 Gossypium hirsutum HOM05D005767 ORTHO05D006785 1.3e-149 534.3 578 52.8
Os09g0536000 Oryza sativa ssp. japonica HOM05D005767 ORTHO05D006785 1.1e-145 521.2 645 47.4
ATR0810G226 Amborella trichopoda HOM05D005767 ORTHO05D006785 7.2e-145 518.5 584 49.7
FAN26G2808 Fragaria x ananassa HOM05D005767 ORTHO05D006785 8.3e-141 505.0 463 57.0
MBI09_g09407_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 5.0e-138 495.7 578 49.1
Actinidia22973 Actinidia chinensis HOM05D005767 ORTHO05D006785 1.7e-133 480.7 633 47.2
Mapoly0107s0007 Marchantia polymorpha HOM05D005767 ORTHO05D006785 4.3e-129 466.1 654 42.0
Pp3c17_13320 Physcomitrium patens HOM05D005767 ORTHO05D006785 1.1e-121 441.4 637 40.0
SMO356G0595 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 1.5e-113 414.5 603 41.0
Hma1.2p1_1115F.1_g258820 Hydrangea macrophylla HOM05D005767 ORTHO05D006785 1.0e-106 391.7 316 62.3
Lalb_Chr05g0229861 Lupinus albus HOM05D005767 ORTHO05D006785 3.0e-98 363.6 246 70.3
Eucgr.I02343 Eucalyptus grandis HOM05D005767 ORTHO05D006785 8.4e-93 345.5 405 47.2
Lalb_Chr05g0229851 Lupinus albus HOM05D005767 ORTHO05D006785 1.7e-77 294.7 383 45.7
FAN28G0764 Fragaria x ananassa HOM05D005767 ORTHO05D006785 3.9e-74 283.5 215 64.7
AagrBONN_evm.TU.Sc2ySwM_344.3375 Anthoceros agrestis HOM05D005767 ORTHO05D006785 1.5e-70 271.6 467 37.7
Psat7g239080 Pisum sativum HOM05D005767 ORTHO05D006785 2.0e-57 228.0 161 68.3
CBR_g18710 Chara braunii HOM05D005767 ORTHO05D006785 2.7e-51 207.6 245 44.5
SMO290G0007 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 3.9e-50 203.8 228 49.1
SEGI_12703 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 1.5e-41 175.3 139 57.6
Glyma.16G128500 Glycine max HOM05D005767 ORTHO05D006785 2.6e-41 174.5 216 47.2
SMO356G0427 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 1.6e-38 165.2 432 30.8
MBI09_g45348_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 2.6e-38 164.5 130 64.6
Lsat_1_v5_gn_9_7060 Lactuca sativa HOM05D005767 ORTHO05D006785 7.7e-38 162.9 206 46.6
Cre12.g532750 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 1.7e-37 161.8 286 37.1
MCO08G331 Micromonas commoda HOM05D005767 ORTHO05D006785 4.7e-35 153.7 340 31.2
Potri.005G113301 Populus trichocarpa HOM05D005767 ORTHO05D006785 1.3e-32 145.6 268 35.8
CARHR244450 Cardamine hirsuta HOM05D005767 ORTHO05D006785 6.3e-32 143.3 314 33.1
Cfa024213 Carpinus fangiana HOM05D005767 ORTHO05D006785 1.4e-31 142.1 300 33.3
GSVIVG01018775001 Vitis vinifera HOM05D005767 ORTHO05D006785 1.7e-29 135.2 88 71.6
MD15G1245100 Malus domestica HOM05D005767 ORTHO05D006785 5.2e-26 123.6 145 52.4
SMO290G0017 Selaginella moellendorffii HOM05D001672 ORTHO05D006785 9.8e-25 119.4 239 36.8
Sc16g0002220 Simmondsia chinensis HOM05D005767 ORTHO05D006785 9.8e-25 119.4 74 75.7
SEGI_01145 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 6.3e-24 116.7 113 52.2
AagrBONN_evm.TU.Sc2ySwM_117.1514 Anthoceros agrestis HOM05D005767 ORTHO05D006785 7.0e-23 113.2 354 26.0
MD15G1244800 Malus domestica HOM05D005767 ORTHO05D006785 2.0e-22 111.7 252 34.9
Cre12.g534151 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 4.5e-22 110.5 332 27.7
Psat7g239040 Pisum sativum HOM05D005767 ORTHO05D006785 7.7e-22 109.8 70 70.0
arahy.Tifrunner.gnm1.ann1.S1GY7D Arachis hypogaea HOM05D005767 ORTHO05D006785 2.3e-21 108.2 166 41.0
Cre07.g350550 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 4.2e-20 104.0 281 31.3
MD15G1244900 Malus domestica HOM05D005767 ORTHO05D006785 1.4e-18 99.0 88 55.7
Manes.09G016000 Manihot esculenta HOM05D005620 ORTHO05D002193 1.2e-17 95.9 279 29.0
SMO356G0296 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 1.2e-17 95.9 349 27.5
CBR_g48654 Chara braunii HOM05D005767 ORTHO05D006785 4.4e-17 94.0 204 31.4
Sed0006254 Sechium edule HOM05D005620 ORTHO05D002193 4.4e-17 94.0 286 27.6
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 1.3e-16 92.4 279 28.7
CSS0011392 Camellia sinensis var. sinensis HOM05D005620 ORTHO05D002193 1.7e-16 92.0 276 27.9
Pp3c3_16930 Physcomitrium patens HOM05D005767 ORTHO05D006785 2.2e-16 91.7 210 28.6
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 2.9e-16 91.3 279 28.3
Sc19g0008380 Simmondsia chinensis HOM05D005620 ORTHO05D002193 4.9e-16 90.5 278 27.7
CANSAT80G0060 Cannabis sativa HOM05D005620 ORTHO05D002193 6.3e-16 90.1 277 27.1
CANSAT80G0759 Cannabis sativa HOM05D005620 ORTHO05D002193 6.3e-16 90.1 277 27.1
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 8.3e-16 89.7 279 28.0
SMO145G0259 Selaginella moellendorffii HOM05D005620 ORTHO05D002193 8.3e-16 89.7 281 27.4
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 1.1e-15 89.4 279 28.0
Actinidia09295 Actinidia chinensis HOM05D005620 ORTHO05D002193 1.8e-15 88.6 280 27.5
EL10Ac3g07159 Beta vulgaris HOM05D005620 ORTHO05D002193 1.8e-15 88.6 279 27.6
ClCG10G015520 Citrullus lanatus HOM05D005620 ORTHO05D002193 1.8e-15 88.6 290 27.2
Os01g0801100 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 1.8e-15 88.6 279 29.0
Thecc.05G145200 Theobroma cacao HOM05D005620 ORTHO05D002193 1.8e-15 88.6 279 27.2
MELO3C009829.2 Cucumis melo HOM05D005620 ORTHO05D002193 2.4e-15 88.2 277 27.4
Lsat_1_v5_gn_9_32000 Lactuca sativa HOM05D005620 ORTHO05D002193 2.4e-15 88.2 279 27.2
GSVIVG01033553001 Vitis vinifera HOM05D005620 ORTHO05D002193 2.4e-15 88.2 280 27.9
Eucgr.I02344 Eucalyptus grandis HOM05D005767 ORTHO05D006785 3.2e-15 87.8 206 34.5
Psat6g118160 Pisum sativum HOM05D005620 ORTHO05D002193 4.1e-15 87.4 280 27.5
TWI53G0502 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 5.4e-15 87.0 279 27.2
ECA247G2062 Erigeron canadensis HOM05D005620 ORTHO05D002193 7.0e-15 86.7 279 27.2
Medtr1g051380 Medicago truncatula HOM05D005620 ORTHO05D002193 9.2e-15 86.3 281 27.4
Ciclev10005485m.g Citrus clementina HOM05D005620 ORTHO05D002193 4.6e-14 84.0 279 27.2
HanXRQChr10g0298661 Helianthus annuus HOM05D005620 ORTHO05D002193 4.6e-14 84.0 279 26.9
arahy.Tifrunner.gnm1.ann1.VNMU4U Arachis hypogaea HOM05D005620 ORTHO05D002193 7.8e-14 83.2 278 27.0
Phvul.007G249300 Phaseolus vulgaris HOM05D005620 ORTHO05D002193 7.8e-14 83.2 280 27.5
Lj5g0010383 Lotus japonicus HOM05D005620 ORTHO05D002193 1.3e-13 82.4 276 26.1
COL.COLO4_21299 Corchorus olitorius HOM05D005620 ORTHO05D002193 1.7e-13 82.0 294 27.6
Mapoly0057s0088 Marchantia polymorpha HOM05D005620 ORTHO05D002193 1.7e-13 82.0 281 28.5
AagrBONN_evm.TU.Sc2ySwM_369.93 Anthoceros agrestis HOM05D005620 ORTHO05D002193 2.9e-13 81.3 282 24.1
Sabra16G0047700 Salix brachista HOM05D005620 ORTHO05D002193 2.9e-13 81.3 279 26.5
SEGI_27797 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 3.9e-13 80.9 232 31.9
Solyc04g016530.3 Solanum lycopersicum HOM05D005620 ORTHO05D002193 3.9e-13 80.9 278 25.5
Sopen04g008610 Solanum pennellii HOM05D005620 ORTHO05D002193 5.0e-13 80.5 278 25.5
Sc13g0001490 Simmondsia chinensis HOM05D005620 ORTHO05D002193 6.6e-13 80.1 274 25.5
Lalb_Chr02g0156421 Lupinus albus HOM05D005620 ORTHO05D002193 2.5e-12 78.2 279 27.2
Thecc.K0006600 Theobroma cacao HOM05D005620 ORTHO05D002193 4.3e-12 77.4 260 26.9
CAN.G594.8 Capsicum annuum HOM05D005767 ORTHO05D006785 1.6e-11 75.5 76 51.3
arahy.Tifrunner.gnm1.ann1.JHI6E6 Arachis hypogaea HOM05D005767 ORTHO05D006785 3.6e-11 74.3 40 82.5
arahy.Tifrunner.gnm1.ann1.R2J7CI Arachis hypogaea HOM05D005767 ORTHO05D006785 2.3e-10 71.6 41 75.6
SMO356G0207 Selaginella moellendorffii HOM05D001672 ORTHO05D006785 2.4e-07 61.6 61 49.2
Eucgr.I02345 Eucalyptus grandis HOM05D005767 ORTHO05D006785 3.2e-07 61.2 36 69.4
SEGI_05705 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 1.2e-06 59.3 90 37.8
Potri.005G113250 Populus trichocarpa HOM05D005767 ORTHO05D006785 2.0e-06 58.5 32 71.9
MBI09_g09411_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 4.6e-06 57.4 36 69.4
MCO06G208 Micromonas commoda HOM05D005767 ORTHO05D006785 4.6e-06 57.4 67 40.3


User provided reference genes

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