Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 2.0e-163 578.9 279 100.0
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 2.9e-45 186.4 239 46.0
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 4.2e-44 182.6 237 43.9
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 3.4e-41 172.9 241 42.3
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.7e-40 170.6 238 42.4
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 2.8e-40 169.9 262 38.9
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 2.4e-39 166.8 235 38.7
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 4.3e-36 156.0 233 38.6
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 4.3e-36 156.0 236 37.3
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 9.5e-36 154.8 230 38.3
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 1.2e-35 154.5 270 34.8
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 6.8e-34 148.7 228 37.3
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 6.8e-34 148.7 250 37.6
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 3.4e-33 146.4 227 38.8
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 4.4e-33 146.0 235 35.7
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 3.2e-31 139.8 279 33.0
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 1.6e-30 137.5 157 43.9
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 4.3e-28 129.4 237 33.3
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 7.3e-28 128.6 239 32.2
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 7.3e-28 128.6 234 35.0
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.8e-27 126.7 206 37.4
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 8.0e-27 125.2 164 43.3
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.4e-26 124.4 242 33.5
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.0e-26 122.9 242 31.8
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 5.2e-26 122.5 242 31.4
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 5.2e-26 122.5 242 33.5
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 5.2e-26 122.5 227 33.5
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 5.2e-26 122.5 228 31.6
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 6.8e-26 122.1 237 34.6
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.5e-25 120.9 243 34.2
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.0e-25 120.6 162 40.1
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 7.5e-25 118.6 239 33.1
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 3.7e-24 116.3 246 31.7
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 6.4e-24 115.5 156 38.5
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 2.4e-23 113.6 260 30.0
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 3.5e-22 109.8 244 32.8
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-21 107.5 144 39.6
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 3.0e-21 106.7 235 31.9
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 8.6e-21 105.1 229 30.6
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.5e-20 104.4 224 30.8
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 2.5e-20 103.6 268 31.7
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.6e-20 102.4 279 28.3
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 5.6e-20 102.4 257 29.6
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 9.5e-20 101.7 260 28.8
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 1.2e-19 101.3 159 37.1
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.6e-19 100.9 135 39.3
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 2.1e-19 100.5 173 34.1
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 2.1e-19 100.5 236 30.5
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 3.6e-19 99.8 258 31.0
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 3.6e-19 99.8 268 28.4
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 4.7e-19 99.4 258 29.1
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 6.2e-19 99.0 176 33.0
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 8.1e-19 98.6 256 32.0
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.1e-18 98.2 259 30.5
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-18 98.2 256 31.6
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.1e-18 98.2 276 29.0
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.8e-18 97.4 176 33.0
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 4.0e-18 96.3 263 32.3
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.0e-18 96.3 176 33.0
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 5.2e-18 95.9 264 31.1
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 6.8e-18 95.5 271 30.3
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 2.6e-17 93.6 263 30.8
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 4.4e-17 92.8 226 27.0
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 4.4e-17 92.8 269 27.1
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 5.8e-17 92.4 269 27.1
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 9.9e-17 91.7 192 30.7
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 1.7e-16 90.9 161 34.2
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.9e-16 90.1 109 43.1
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 6.4e-16 89.0 148 35.8
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.9e-15 87.4 143 34.3
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 4.1e-15 86.3 133 37.6
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 5.4e-15 85.9 158 32.9
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 7.1e-15 85.5 138 37.7
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 1.2e-14 84.7 106 44.3
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 2.1e-14 84.0 128 39.8
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 2.7e-14 83.6 256 28.9
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 4.6e-14 82.8 132 37.1
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 4.6e-14 82.8 132 37.1
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 7.8e-14 82.0 198 33.3
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 1.7e-13 80.9 92 45.7
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-13 80.9 266 27.1
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.3e-13 80.5 212 28.3
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 3.0e-13 80.1 127 36.2
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 3.0e-13 80.1 127 36.2
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 3.0e-13 80.1 127 36.2
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 8.6e-13 78.6 128 36.7
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 1.1e-12 78.2 128 36.7
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 1.1e-12 78.2 128 36.7
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 1.9e-12 77.4 310 24.2
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 9.5e-12 75.1 162 34.6
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 2.1e-11 73.9 200 27.0
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 2.1e-11 73.9 143 33.6
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.6e-11 73.2 127 37.8
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 3.6e-11 73.2 207 28.5
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 4.7e-11 72.8 141 29.8
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 8.1e-11 72.0 138 29.7
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.4e-10 71.2 73 50.7
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.4e-10 71.2 209 29.7
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.4e-10 70.5 123 33.3
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 3.1e-10 70.1 130 32.3
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.1e-10 70.1 142 32.4
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 4.0e-10 69.7 149 34.9
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 5.2e-10 69.3 67 53.7
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 5.2e-10 69.3 129 33.3
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 6.8e-10 68.9 131 31.3
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 8.9e-10 68.6 66 51.5
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 8.9e-10 68.6 66 51.5
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 8.9e-10 68.6 131 31.3
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 8.9e-10 68.6 135 31.1
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 1.2e-09 68.2 132 36.4
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.2e-09 68.2 178 31.5
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 2.6e-09 67.0 65 55.4
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.4e-09 66.2 151 32.5
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 4.4e-09 66.2 47 66.0
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 2.2e-08 63.9 115 33.9
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 2.9e-08 63.5 133 28.6
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 3.8e-08 63.2 41 65.9
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 4.9e-08 62.8 46 60.9
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.9e-08 62.8 133 30.1
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 6.4e-08 62.4 133 30.1
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 8.4e-08 62.0 128 30.5
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 2.4e-07 60.5 56 55.4
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 2.4e-07 60.5 147 31.3
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 3.2e-07 60.1 79 44.3
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 4.1e-07 59.7 178 28.7
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 4.1e-07 59.7 100 39.0
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 5.4e-07 59.3 137 29.9
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 5.4e-07 59.3 137 29.9
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 7.1e-07 58.9 141 31.2
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 9.2e-07 58.5 136 29.4
Rhsim05G0193300 Rhododendron simsii HOM05D022761 ORTHO05D022494 1.2e-06 58.2 121 28.9
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.6e-06 57.8 136 30.1
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.6e-06 57.8 50 58.0
RhsimUnG0081700 Rhododendron simsii HOM05D022761 ORTHO05D022494 1.6e-06 57.8 121 28.9
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 2.1e-06 57.4 155 29.0
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 2.1e-06 57.4 55 50.9
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 2.1e-06 57.4 138 31.2
TWI31G0695 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 2.1e-06 57.4 56 51.8
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 2.7e-06 57.0 134 29.9
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 3.5e-06 56.6 178 28.1
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 3.5e-06 56.6 135 28.1
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 3.5e-06 56.6 175 26.9
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 4.6e-06 56.2 52 50.0
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 4.6e-06 56.2 46 54.3
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 6.0e-06 55.8 51 54.9
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 6.0e-06 55.8 51 54.9
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 6.0e-06 55.8 51 54.9
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 6.0e-06 55.8 130 31.5


User provided reference genes

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