Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 1.4e-72 276.2 136 100.0
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 3.8e-22 108.6 93 55.9
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 1.1e-21 107.1 91 54.9
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 1.4e-21 106.7 95 51.6
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 1.9e-21 106.3 91 54.9
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 5.5e-21 104.8 95 52.6
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 7.2e-21 104.4 93 52.7
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 9.4e-21 104.0 87 52.9
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 9.4e-21 104.0 94 51.1
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 2.1e-20 102.8 97 51.5
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 2.1e-20 102.8 97 51.5
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 2.7e-20 102.4 89 52.8
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 2.7e-20 102.4 91 52.7
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 3.6e-20 102.1 119 45.4
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 3.6e-20 102.1 89 51.7
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 6.1e-20 101.3 90 53.3
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 6.1e-20 101.3 88 52.3
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 7.9e-20 100.9 106 48.1
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 7.9e-20 100.9 95 51.6
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 7.9e-20 100.9 93 49.5
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 1.8e-19 99.8 99 49.5
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.8e-19 99.8 92 53.3
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 1.8e-19 99.8 94 51.1
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 3.0e-19 99.0 97 48.5
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 3.0e-19 99.0 88 50.0
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 3.0e-19 99.0 102 49.0
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 3.0e-19 99.0 91 51.6
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 3.0e-19 99.0 90 50.0
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 3.9e-19 98.6 93 51.6
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 5.1e-19 98.2 90 50.0
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 5.1e-19 98.2 86 51.2
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 5.1e-19 98.2 82 56.1
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 6.7e-19 97.8 88 54.5
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 8.8e-19 97.4 98 45.9
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 1.1e-18 97.1 104 48.1
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.1e-18 97.1 79 53.2
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.5e-18 96.7 106 46.2
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.5e-18 96.7 79 58.2
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 1.5e-18 96.7 94 43.6
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 1.9e-18 96.3 86 48.8
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 2.5e-18 95.9 93 49.5
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 3.3e-18 95.5 99 52.5
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 4.3e-18 95.1 100 52.0
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 5.7e-18 94.7 91 49.5
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 5.7e-18 94.7 93 49.5
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 5.7e-18 94.7 94 46.8
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 7.4e-18 94.4 95 49.5
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 7.4e-18 94.4 116 44.0
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 7.4e-18 94.4 98 46.9
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 7.4e-18 94.4 101 49.5
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 7.4e-18 94.4 81 53.1
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 9.7e-18 94.0 83 50.6
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 9.7e-18 94.0 92 50.0
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 1.3e-17 93.6 92 50.0
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.3e-17 93.6 79 57.0
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 1.3e-17 93.6 118 45.8
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 1.7e-17 93.2 95 46.3
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 1.7e-17 93.2 95 49.5
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 1.7e-17 93.2 81 51.9
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 1.7e-17 93.2 81 50.6
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 1.7e-17 93.2 116 43.1
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 2.2e-17 92.8 94 46.8
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 2.8e-17 92.4 80 53.8
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.8e-17 92.4 84 53.6
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 3.7e-17 92.0 91 48.4
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 3.7e-17 92.0 97 46.4
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 3.7e-17 92.0 95 49.5
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 3.7e-17 92.0 81 48.1
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 3.7e-17 92.0 90 52.2
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 4.8e-17 91.7 80 52.5
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 6.3e-17 91.3 84 52.4
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 8.2e-17 90.9 109 44.0
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 8.2e-17 90.9 92 47.8
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.1e-16 90.5 95 44.2
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 1.1e-16 90.5 88 48.9
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 1.1e-16 90.5 93 47.3
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 1.1e-16 90.5 88 51.1
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 1.4e-16 90.1 111 45.0
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 1.4e-16 90.1 126 38.1
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 1.4e-16 90.1 80 53.8
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.8e-16 89.7 92 47.8
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.8e-16 89.7 92 47.8
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 1.8e-16 89.7 89 49.4
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 1.8e-16 89.7 90 48.9
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 2.4e-16 89.4 87 50.6
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 3.1e-16 89.0 115 41.7
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 3.1e-16 89.0 106 44.3
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 3.1e-16 89.0 89 49.4
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 4.1e-16 88.6 81 51.9
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 4.1e-16 88.6 82 51.2
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 4.1e-16 88.6 82 50.0
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 6.9e-16 87.8 113 45.1
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 6.9e-16 87.8 80 51.2
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 6.9e-16 87.8 111 39.6
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 6.9e-16 87.8 102 48.0
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 6.9e-16 87.8 102 48.0
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 6.9e-16 87.8 80 51.2
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 9.1e-16 87.4 85 45.9
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 9.1e-16 87.4 84 46.4
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 9.1e-16 87.4 85 49.4
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 1.2e-15 87.0 98 48.0
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.5e-15 86.7 99 44.4
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 1.5e-15 86.7 89 44.9
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.0e-15 86.3 81 50.6
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 2.0e-15 86.3 111 38.7
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 2.6e-15 85.9 104 44.2
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 2.6e-15 85.9 109 41.3
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 2.6e-15 85.9 81 49.4
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 4.5e-15 85.1 88 50.0
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 4.5e-15 85.1 89 50.6
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 5.9e-15 84.7 80 46.2
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 7.7e-15 84.3 86 48.8
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 7.7e-15 84.3 81 49.4
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.0e-14 84.0 92 48.9
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.0e-14 84.0 77 53.2
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 1.3e-14 83.6 113 38.9
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 1.7e-14 83.2 84 46.4
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 1.7e-14 83.2 86 46.5
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 1.7e-14 83.2 88 47.7
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 1.7e-14 83.2 88 47.7
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 2.2e-14 82.8 90 42.2
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.2e-14 82.8 99 43.4
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 2.2e-14 82.8 86 48.8
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 2.2e-14 82.8 85 45.9
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 2.9e-14 82.4 127 37.0
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 2.9e-14 82.4 104 41.3
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.9e-14 82.4 92 50.0
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.9e-14 82.4 133 39.1
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 3.8e-14 82.0 86 46.5
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 3.8e-14 82.0 88 44.3
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 5.0e-14 81.6 82 48.8
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 5.0e-14 81.6 89 47.2
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 6.5e-14 81.3 108 40.7
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 8.5e-14 80.9 103 44.7
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 8.5e-14 80.9 81 48.1
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 8.5e-14 80.9 91 42.9
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 8.5e-14 80.9 89 49.4
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 1.4e-13 80.1 80 48.8
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 1.4e-13 80.1 80 48.8
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 1.4e-13 80.1 89 43.8
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 1.4e-13 80.1 84 51.2
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 1.9e-13 79.7 89 42.7
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 3.2e-13 79.0 80 47.5
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 3.2e-13 79.0 108 39.8
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 3.2e-13 79.0 80 52.5
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 4.2e-13 78.6 81 46.9
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 5.5e-13 78.2 80 47.5
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 5.5e-13 78.2 96 47.9
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 7.2e-13 77.8 80 47.5
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 9.4e-13 77.4 89 46.1
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 9.4e-13 77.4 80 48.8
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 1.2e-12 77.0 73 52.1
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 1.2e-12 77.0 113 40.7
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 1.6e-12 76.6 101 41.6
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 2.1e-12 76.3 80 46.2
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 2.1e-12 76.3 80 46.2
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 4.7e-12 75.1 99 40.4
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 6.1e-12 74.7 86 43.0
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 7.9e-12 74.3 105 39.0
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 1.0e-11 73.9 86 41.9
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 3.0e-11 72.4 92 42.4
SEGI_19919 Sequoiadendron giganteum HOM05D000399 ORTHO05D010012 5.1e-11 71.6 79 44.3
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 6.7e-11 71.2 97 39.2
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 2.0e-10 69.7 82 46.3
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 2.0e-10 69.7 89 39.3
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 2.6e-10 69.3 97 39.2
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 3.3e-10 68.9 87 42.5
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 3.3e-10 68.9 100 36.0
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 9.7e-10 67.4 87 41.4
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 1.3e-09 67.0 105 39.0
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 1.3e-09 67.0 91 38.5
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 1.7e-09 66.6 68 52.9
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 2.2e-09 66.2 53 62.3
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 4.1e-08 62.0 52 55.8
SalBow7G4661 Salvia bowleyana HOM05D000399 ORTHO05D010012 4.5e-07 58.5 44 61.4
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 2.9e-06 55.8 56 41.1
MSTRG.6943 Avicennia marina HOM05D000399 ORTHO05D000304 8.5e-06 54.3 71 39.4


User provided reference genes

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