Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold59G20764 Striga asiatica HOM05D000688 ORTHO05D051402 7.1e-26 120.6 100 100.0
SGA_v2.0_scaffold59G20765 Striga asiatica HOM05D000688 ORTHO05D051402 8.1e-22 107.1 54 94.4
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 9.9e-20 100.1 54 90.7
SGA_v2.0_scaffold169G38607 Striga asiatica HOM05D000688 ORTHO05D004737 3.3e-15 85.1 54 75.9
Migut.E01463 Erythranthe guttata HOM05D000688 ORTHO05D004737 8.4e-11 70.5 54 64.8
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 1.4e-10 69.7 54 61.1
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 1.4e-10 69.7 54 61.1
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 1.9e-10 69.3 54 63.0
HanXRQChr11g0320381 Helianthus annuus HOM05D000688 ORTHO05D004737 3.2e-10 68.6 54 61.1
Rhsim02G0213200 Rhododendron simsii HOM05D000688 ORTHO05D004737 3.2e-10 68.6 54 61.1
HanXRQChr15g0484591 Helianthus annuus HOM05D000688 ORTHO05D004737 4.2e-10 68.2 54 63.0
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 7.1e-10 67.4 54 59.3
Os04g0641000 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 7.1e-10 67.4 54 57.4
vmacro11243 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 7.1e-10 67.4 54 61.1
vmacro13779 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 7.1e-10 67.4 54 61.1
Actinidia10520 Actinidia chinensis HOM05D000688 ORTHO05D004737 9.3e-10 67.0 54 61.1
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 9.3e-10 67.0 54 57.4
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 9.3e-10 67.0 51 70.6
Dinv03974 Davidia involucrata HOM05D000688 ORTHO05D004737 1.6e-09 66.2 54 57.4
Dinv40966 Davidia involucrata HOM05D000688 ORTHO05D004737 1.6e-09 66.2 54 57.4
Lsat_1_v5_gn_9_69261 Lactuca sativa HOM05D000688 ORTHO05D004737 1.6e-09 66.2 54 59.3
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 1.6e-09 66.2 54 59.3
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 1.6e-09 66.2 54 55.6
AUR62009365 Chenopodium quinoa HOM05D000688 ORTHO05D004737 2.1e-09 65.9 54 57.4
AUR62023046 Chenopodium quinoa HOM05D000688 ORTHO05D004737 2.1e-09 65.9 54 57.4
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 2.1e-09 65.9 54 63.0
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 2.1e-09 65.9 54 59.3
CAN.G1269.4 Capsicum annuum HOM05D000688 ORTHO05D004737 2.7e-09 65.5 54 59.3
Lj7C733G5 Lonicera japonica HOM05D000688 ORTHO05D004737 2.7e-09 65.5 54 57.4
Nitab4.5_0001033g0090 Nicotiana tabacum HOM05D000688 ORTHO05D004737 2.7e-09 65.5 54 59.3
Peaxi162Scf00408g00711 Petunia axillaris HOM05D000688 ORTHO05D004737 2.7e-09 65.5 54 59.3
CAN.G352.64 Capsicum annuum HOM05D000688 ORTHO05D004737 3.5e-09 65.1 54 59.3
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 3.5e-09 65.1 54 57.4
Cc01_g06880 Coffea canephora HOM05D000688 ORTHO05D004737 3.5e-09 65.1 54 57.4
ECA232G0687 Erigeron canadensis HOM05D000688 ORTHO05D004737 3.5e-09 65.1 54 55.6
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 3.5e-09 65.1 54 57.4
Ah.16g104830 Amaranthus hybridus HOM05D000688 ORTHO05D004737 4.6e-09 64.7 54 55.6
MSTRG.1633 Avicennia marina HOM05D000688 ORTHO05D004737 4.6e-09 64.7 54 57.4
Eucgr.C00069 Eucalyptus grandis HOM05D000688 ORTHO05D004737 4.6e-09 64.7 54 59.3
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 4.6e-09 64.7 54 55.6
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 4.6e-09 64.7 54 53.7
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 4.6e-09 64.7 54 53.7
PGSC0003DMG400030880 Solanum tuberosum HOM05D000688 ORTHO05D004737 4.6e-09 64.7 54 59.3
CSS0012771 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 6.0e-09 64.3 54 57.4
CSS0012935 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 6.0e-09 64.3 54 57.4
CSS0050165 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 6.0e-09 64.3 54 57.4
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 6.0e-09 64.3 54 57.4
Hma1.2p1_2081F.1_g313530 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 6.0e-09 64.3 54 57.4
Hma1.2p1_2362F.1_g320630 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 6.0e-09 64.3 54 57.4
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 7.9e-09 63.9 54 55.6
Peaxi162Scf00053g00812 Petunia axillaris HOM05D000688 ORTHO05D004737 7.9e-09 63.9 54 59.3
Hund19557 Selenicereus undatus HOM05D000688 ORTHO05D004737 7.9e-09 63.9 54 53.7
unitig_8.g3063 Utricularia gibba HOM05D000688 ORTHO05D004737 7.9e-09 63.9 54 51.9
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 1.0e-08 63.5 54 55.6
COL.COLO4_35449 Corchorus olitorius HOM05D000688 ORTHO05D004737 1.0e-08 63.5 54 57.4
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 1.0e-08 63.5 54 55.6
Nn1g00540 Nelumbo nucifera HOM05D000688 ORTHO05D004737 1.0e-08 63.5 54 53.7
Solyc03g110880.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 1.0e-08 63.5 54 57.4
Sopen03g030070 Solanum pennellii HOM05D000688 ORTHO05D004737 1.0e-08 63.5 54 57.4
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 1.0e-08 63.5 54 55.6
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 1.3e-08 63.2 54 55.6
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 1.3e-08 63.2 54 59.3
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 1.8e-08 62.8 54 55.6
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 1.8e-08 62.8 54 53.7
TAR624G0960 Trochodendron aralioides HOM05D000688 ORTHO05D004737 1.8e-08 62.8 54 59.3
GSVIVG01035963001 Vitis vinifera HOM05D000688 ORTHO05D004737 1.8e-08 62.8 54 55.6
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 2.3e-08 62.4 54 53.7
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 2.3e-08 62.4 54 53.7
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 2.3e-08 62.4 54 53.7
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 2.3e-08 62.4 54 61.1
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 2.3e-08 62.4 54 51.9
Sopen08g024590 Solanum pennellii HOM05D000688 ORTHO05D004737 2.3e-08 62.4 54 57.4
Aqoxy2G03035 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 3.0e-08 62.0 54 53.7
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 3.0e-08 62.0 54 53.7
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 3.0e-08 62.0 54 53.7
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 3.0e-08 62.0 54 53.7
AUR62020625 Chenopodium quinoa HOM05D000688 ORTHO05D004737 3.0e-08 62.0 54 51.9
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 3.0e-08 62.0 54 55.6
Nitab4.5_0006627g0050 Nicotiana tabacum HOM05D000688 ORTHO05D004737 3.0e-08 62.0 54 59.3
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 5.1e-08 61.2 54 53.7
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 5.1e-08 61.2 54 53.7
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 5.1e-08 61.2 54 53.7
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 5.1e-08 61.2 54 53.7
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 5.1e-08 61.2 52 55.8
EL10Ac2g04112 Beta vulgaris HOM05D000688 ORTHO05D004737 6.7e-08 60.8 54 51.9
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 6.7e-08 60.8 54 51.9
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 6.7e-08 60.8 54 53.7
PGR142G2531 Punica granatum HOM05D000688 ORTHO05D004737 6.7e-08 60.8 54 53.7
PGR142G3000 Punica granatum HOM05D000688 ORTHO05D004737 6.7e-08 60.8 54 53.7
Solyc08g075940.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 6.7e-08 60.8 54 55.6
Zm00001eb068960 Zea mays HOM05D000688 ORTHO05D004737 8.7e-08 60.5 54 55.6
Zm00001eb431870 Zea mays HOM05D000688 ORTHO05D004737 8.7e-08 60.5 54 55.6
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 1.1e-07 60.1 54 57.4
PSO478G0475 Papaver somniferum HOM05D000688 ORTHO05D004737 1.1e-07 60.1 58 55.2
AUR62038757 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.5e-07 59.7 54 51.9
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 1.5e-07 59.7 54 51.9
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 1.9e-07 59.3 54 48.1
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 1.9e-07 59.3 54 48.1
PSO017G0269 Papaver somniferum HOM05D000688 ORTHO05D004737 1.9e-07 59.3 58 55.2
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 1.9e-07 59.3 54 50.0
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 1.9e-07 59.3 54 51.9
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 2.5e-07 58.9 54 51.9
CDE08G0368 Ceratophyllum demersum HOM05D000688 ORTHO05D004737 2.5e-07 58.9 58 51.7
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 2.5e-07 58.9 54 53.7
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 2.5e-07 58.9 52 51.9
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 4.3e-07 58.2 52 53.8
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 4.3e-07 58.2 52 53.8
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 4.3e-07 58.2 52 53.8
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 4.3e-07 58.2 52 53.8
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 4.3e-07 58.2 52 53.8
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 4.3e-07 58.2 52 53.8
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 5.7e-07 57.8 54 50.0
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 5.7e-07 57.8 54 50.0
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 5.7e-07 57.8 54 50.0
BolC5t33520H Brassica oleracea HOM05D000688 ORTHO05D004737 5.7e-07 57.8 54 50.0
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 5.7e-07 57.8 54 50.0
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 5.7e-07 57.8 54 50.0
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 7.4e-07 57.4 54 50.0
AT3G18090 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 7.4e-07 57.4 54 50.0
Sc09g0010620 Simmondsia chinensis HOM05D000688 ORTHO05D004737 7.4e-07 57.4 54 46.3
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 9.6e-07 57.0 54 48.1
DCAR_003109 Daucus carota HOM05D000688 ORTHO05D004737 1.3e-06 56.6 54 50.0
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 1.3e-06 56.6 54 55.6
MBI05_g00401_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D004737 1.6e-06 56.2 54 53.7
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 1.6e-06 56.2 52 51.9
BcaC05g28676 Brassica carinata HOM05D000688 ORTHO05D004737 2.1e-06 55.8 54 48.1
Ah.10g035680 Amaranthus hybridus HOM05D000688 ORTHO05D004737 2.8e-06 55.5 50 52.0
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 2.8e-06 55.5 54 44.4
BolC5t33527H Brassica oleracea HOM05D000688 ORTHO05D004737 3.7e-06 55.1 54 48.1
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 3.7e-06 55.1 54 48.1


User provided reference genes

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