Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold424G51468 Striga asiatica HOM05D003289 ORTHO05D004594 0.0e+00 1270.4 624 100.0
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 0.0e+00 1167.9 664 88.1
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 2.9e-295 1018.1 662 76.4
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 1.3e-290 1002.7 664 73.9
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 1.5e-262 909.4 663 68.3
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 2.0e-259 899.0 663 69.1
Nitab4.5_0003532g0050 Nicotiana tabacum HOM05D003289 ORTHO05D004594 5.8e-259 897.5 667 66.0
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 7.5e-259 897.1 667 65.5
Solyc11g067140.2 Solanum lycopersicum HOM05D003289 ORTHO05D004594 2.9e-258 895.2 667 65.2
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 3.5e-256 888.3 665 66.3
Peaxi162Scf00544g00919 Petunia axillaris HOM05D003289 ORTHO05D004594 3.5e-256 888.3 663 65.6
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 1.0e-255 886.7 665 66.5
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 8.6e-255 883.6 667 64.3
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 1.4e-249 866.3 664 63.7
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 9.2e-249 863.6 643 66.1
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 3.0e-247 858.6 667 64.0
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 3.6e-245 851.7 664 63.3
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 1.9e-241 839.3 665 62.1
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 1.9e-241 839.3 667 63.9
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 4.2e-241 838.2 663 62.4
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 1.9e-238 829.3 667 63.4
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 2.8e-237 825.5 665 62.0
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 1.1e-236 823.5 664 60.5
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 2.9e-234 815.5 665 62.0
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 4.9e-234 814.7 665 61.4
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 6.4e-234 814.3 667 61.8
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 8.4e-234 813.9 694 59.7
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 1.4e-233 813.1 663 61.2
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 4.2e-233 811.6 665 61.2
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 7.9e-232 807.4 662 60.9
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 1.8e-231 806.2 667 61.5
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 2.3e-231 805.8 667 61.3
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 5.1e-231 804.7 667 60.3
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 8.7e-231 803.9 666 59.9
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 1.5e-230 803.1 665 59.5
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 1.9e-230 802.7 661 60.5
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 2.5e-230 802.4 664 59.6
Psat7g153200 Pisum sativum HOM05D003289 ORTHO05D004594 2.5e-230 802.4 664 59.5
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 5.6e-230 801.2 668 60.9
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 4.8e-229 798.1 661 60.4
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 9.0e-228 793.9 663 60.2
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 2.0e-227 792.7 664 60.5
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 2.6e-227 792.3 666 59.9
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 7.6e-227 790.8 666 59.9
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 7.6e-227 790.8 667 59.5
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 1.7e-226 789.6 664 59.9
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 2.2e-226 789.3 666 59.8
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 3.8e-226 788.5 670 60.1
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 4.9e-226 788.1 664 59.9
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 8.4e-226 787.3 662 58.9
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 1.1e-225 786.9 664 59.9
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 1.1e-225 786.9 664 59.3
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 1.1e-225 786.9 658 59.6
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 1.4e-225 786.6 663 58.7
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 2.3e-223 779.2 660 59.1
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 1.9e-222 776.2 691 58.0
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 5.6e-222 774.6 758 53.4
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 9.6e-222 773.9 665 57.4
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 2.1e-221 772.7 658 58.8
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 3.7e-221 771.9 661 59.5
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 1.2e-219 766.9 667 56.5
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 1.5e-219 766.5 691 56.4
Os02g0511901 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 9.3e-217 757.3 665 56.4
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 1.2e-216 756.9 667 56.8
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 2.1e-216 756.1 761 51.9
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 4.3e-214 748.4 669 56.5
CAN.G1177.9 Capsicum annuum HOM05D003289 ORTHO05D004594 1.3e-213 746.9 658 58.7
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 5.5e-209 731.5 603 60.0
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 5.5e-209 731.5 667 55.3
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 4.6e-208 728.4 664 56.0
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 1.3e-205 720.3 666 54.8
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 2.2e-205 719.5 661 55.1
Nitab4.5_0004240g0020 Nicotiana tabacum HOM05D003289 ORTHO05D004594 8.5e-202 707.6 510 67.6
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 9.7e-198 694.1 602 58.3
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 2.6e-195 686.0 604 56.6
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 3.5e-195 685.6 633 55.3
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 4.2e-193 678.7 643 55.1
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 3.6e-192 675.6 662 54.1
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 5.7e-190 668.3 665 50.1
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 1.3e-189 667.2 655 53.1
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 4.4e-182 642.1 664 49.7
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 2.2e-181 639.8 665 51.0
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 6.5e-178 628.2 662 50.6
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 7.7e-171 604.7 656 48.6
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 7.7e-171 604.7 657 48.7
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 1.7e-170 603.6 657 48.9
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 2.3e-170 603.2 656 48.3
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 2.9e-170 602.8 657 49.6
Cpa.g.sc32.131 Carica papaya HOM05D003289 ORTHO05D004594 3.0e-167 592.8 509 58.9
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 5.2e-167 592.0 647 51.2
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 6.8e-167 591.7 662 47.1
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 8.9e-167 591.3 662 47.6
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 3.4e-166 589.3 676 46.7
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 2.8e-165 586.3 656 46.6
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 2.8e-165 586.3 676 46.9
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 3.2e-164 582.8 631 48.0
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 1.2e-163 580.9 657 47.8
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 1.3e-162 577.4 662 44.9
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 3.3e-161 572.8 656 46.2
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 3.6e-160 569.3 640 46.7
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 1.4e-156 557.4 429 65.5
HanXRQChr09g0249481 Helianthus annuus HOM05D003289 ORTHO05D004594 3.0e-154 549.7 556 53.1
CBR_g8396 Chara braunii HOM05D003289 ORTHO05D004594 1.9e-137 493.8 585 45.6
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 1.3e-133 481.1 332 69.0
BcaB07g34067 Brassica carinata HOM05D003289 ORTHO05D004594 1.6e-131 474.2 564 46.3
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 3.3e-129 466.5 389 59.6
QL02p000117 Quercus lobata HOM05D003289 ORTHO05D004594 3.5e-123 446.4 310 69.4
ATR0820G074 Amborella trichopoda HOM05D003289 ORTHO05D004594 1.2e-115 421.4 408 53.4
CDE02G3060 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 2.2e-101 374.0 383 49.9
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 2.1e-83 314.3 736 31.1
CiPaw.13G138800 Carya illinoinensis HOM05D003289 ORTHO05D004594 1.0e-69 268.9 235 55.3
Rhsim05G0032400 Rhododendron simsii HOM05D003289 ORTHO05D004594 2.8e-64 250.8 214 58.4
MELO3C033806.2 Cucumis melo HOM05D003289 ORTHO05D004594 2.0e-62 244.6 333 43.2
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 2.7e-62 244.2 699 27.0
CDE02G3272 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 1.2e-57 228.8 234 50.4
RcHm_v2.0_Chr5g0054881 Rosa chinensis HOM05D003289 ORTHO05D028359 1.9e-52 211.5 183 59.0
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 1.4e-50 205.3 689 26.3
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 7.0e-47 193.0 669 24.8
BcaC07g41675 Brassica carinata HOM05D003289 ORTHO05D026451 4.7e-35 153.7 207 42.5
CARHR055750 Cardamine hirsuta HOM05D003289 ORTHO05D004594 4.9e-32 143.7 115 57.4
HanXRQChr09g0249471 Helianthus annuus HOM05D003289 ORTHO05D004594 1.9e-31 141.7 92 63.0
ATR0820G092 Amborella trichopoda HOM05D003289 ORTHO05D004594 1.7e-29 135.2 91 59.3
HPP92_025208 Vanilla planifolia HOM05D003289 ORTHO05D028359 5.1e-29 133.7 203 38.9
DCAR_017672 Daucus carota HOM05D003289 ORTHO05D004594 2.5e-28 131.3 84 73.8
BcaB03g13343 Brassica carinata HOM05D003289 ORTHO05D004594 2.0e-25 121.7 100 56.0
C08p47080 Brassica napus HOM05D003555 ORTHO05D004542 4.1e-23 114.0 99 52.5
BolC8t52247H Brassica oleracea HOM05D003555 ORTHO05D004542 4.1e-23 114.0 104 51.0
Phvul.006G055950 Phaseolus vulgaris HOM05D003289 ORTHO05D028359 4.1e-23 114.0 75 61.3
BraA09t41708Z Brassica rapa HOM05D003555 ORTHO05D004542 1.0e-21 109.4 84 53.6
Glyma.11G237700 Glycine max HOM05D003289 ORTHO05D004594 8.7e-13 79.7 52 57.7
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 5.6e-12 77.0 61 60.7
Aa31LG1G180 Aethionema arabicum HOM05D003289 ORTHO05D004594 9.6e-12 76.3 100 43.0
SEGI_20214 Sequoiadendron giganteum HOM05D003289 ORTHO05D000003 1.1e-10 72.8 80 42.5
SEGI_12002 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 2.4e-10 71.6 89 38.2


User provided reference genes

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