Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold424G51466 Striga asiatica HOM05D003289 ORTHO05D018396 9.3e-181 636.7 316 100.0
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 4.7e-108 395.2 303 67.0
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 4.0e-107 392.1 299 69.9
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 1.1e-104 384.0 301 66.8
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 1.1e-99 367.5 302 64.9
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 4.6e-95 352.1 304 60.2
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 6.6e-94 348.2 304 58.9
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 2.6e-90 336.3 303 58.1
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 2.2e-89 333.2 303 58.4
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 3.8e-89 332.4 304 57.2
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 4.9e-89 332.0 294 59.2
Peaxi162Scf00544g00919 Petunia axillaris HOM05D003289 ORTHO05D004594 6.4e-89 331.6 280 60.0
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 1.9e-88 330.1 303 57.1
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 1.7e-86 323.6 302 56.0
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 2.3e-86 323.2 278 59.7
Solyc11g067140.2 Solanum lycopersicum HOM05D003289 ORTHO05D004594 6.6e-86 321.6 302 55.0
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 1.5e-85 320.5 302 54.6
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 2.5e-85 319.7 304 56.2
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 7.3e-85 318.2 304 56.2
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 9.6e-85 317.8 305 55.1
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 2.1e-84 316.6 304 54.9
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 2.8e-84 316.2 293 56.7
HanXRQChr09g0249471 Helianthus annuus HOM05D003289 ORTHO05D004594 1.8e-83 313.5 304 56.9
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 2.4e-83 313.2 304 55.6
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 5.3e-83 312.0 304 54.6
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 9.0e-83 311.2 304 55.9
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 9.0e-83 311.2 304 53.9
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 9.0e-83 311.2 304 54.9
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 1.2e-82 310.8 304 53.9
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 2.6e-82 309.7 284 56.0
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 9.9e-82 307.8 305 54.1
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 1.3e-81 307.4 256 60.2
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 3.8e-81 305.8 305 54.4
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 3.8e-81 305.8 305 54.4
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 4.9e-81 305.4 304 54.3
Nitab4.5_0003532g0050 Nicotiana tabacum HOM05D003289 ORTHO05D004594 1.1e-80 304.3 350 48.3
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 5.4e-80 302.0 301 52.8
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 7.1e-80 301.6 301 53.2
Cpa.g.sc32.131 Carica papaya HOM05D003289 ORTHO05D004594 1.6e-79 300.4 305 54.4
Nitab4.5_0004240g0020 Nicotiana tabacum HOM05D003289 ORTHO05D004594 4.6e-79 298.9 286 54.2
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 2.3e-78 296.6 300 54.3
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 3.0e-78 296.2 303 52.5
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 3.0e-78 296.2 306 52.6
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 5.1e-78 295.4 305 53.4
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 1.5e-77 293.9 305 54.1
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 1.9e-77 293.5 304 51.3
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 3.6e-76 289.3 306 51.0
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 4.0e-75 285.8 301 50.8
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 5.3e-75 285.4 301 53.2
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 3.4e-74 282.7 306 49.0
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 7.6e-74 281.6 282 53.2
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 9.9e-74 281.2 304 49.3
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 2.9e-73 279.6 263 54.0
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 1.4e-72 277.3 301 50.5
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 2.4e-72 276.6 303 47.2
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 2.4e-72 276.6 300 50.3
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 3.2e-72 276.2 303 48.8
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 9.3e-72 274.6 304 49.0
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 2.1e-71 273.5 309 48.9
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 4.6e-71 272.3 301 49.8
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 4.6e-71 272.3 300 49.3
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 6.0e-71 271.9 310 48.7
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 7.9e-71 271.6 301 49.2
Glyma.11G237700 Glycine max HOM05D003289 ORTHO05D004594 2.3e-70 270.0 282 51.4
ATR0820G092 Amborella trichopoda HOM05D003289 ORTHO05D004594 1.1e-69 267.7 304 48.4
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 1.1e-69 267.7 285 50.9
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 1.5e-69 267.3 301 48.8
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 2.5e-69 266.5 303 45.5
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 4.3e-69 265.8 310 49.4
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 7.4e-69 265.0 263 52.9
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 7.4e-69 265.0 308 46.8
CDE02G3272 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 2.8e-68 263.1 284 46.5
CAN.G1177.9 Capsicum annuum HOM05D003289 ORTHO05D004594 4.8e-68 262.3 245 55.1
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 4.0e-67 259.2 304 51.6
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 4.0e-67 259.2 296 47.3
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 4.0e-67 259.2 257 52.5
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 1.5e-66 257.3 299 47.2
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 1.5e-66 257.3 305 47.9
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 3.4e-66 256.1 307 46.6
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 6.5e-65 251.9 289 48.1
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 3.2e-64 249.6 301 46.8
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 3.2e-64 249.6 301 47.2
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 1.2e-63 247.7 301 46.8
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 3.5e-63 246.1 301 46.2
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 8.7e-62 241.5 305 44.6
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 2.5e-61 240.0 289 46.7
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 3.3e-61 239.6 301 45.2
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 4.3e-61 239.2 301 45.2
QL02p000117 Quercus lobata HOM05D003289 ORTHO05D004594 4.3e-61 239.2 282 49.3
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 4.8e-60 235.7 267 49.8
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 4.8e-60 235.7 271 45.4
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 2.0e-58 230.3 285 45.6
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 3.8e-57 226.1 302 43.4
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 8.4e-57 224.9 264 43.6
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 1.2e-55 221.1 219 51.1
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 7.9e-55 218.4 259 42.1
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 9.7e-53 211.5 283 44.9
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 5.9e-50 202.2 297 37.7
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 7.7e-50 201.8 291 44.0
BcaB07g34067 Brassica carinata HOM05D003289 ORTHO05D004594 1.7e-49 200.7 239 46.9
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 1.6e-47 194.1 161 59.6
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 4.6e-47 192.6 302 39.7
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 2.3e-46 190.3 301 40.5
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 2.3e-46 190.3 301 40.5
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 4.8e-44 182.6 301 35.9
MELO3C002892.2 Cucumis melo HOM05D003289 ORTHO05D004594 3.1e-43 179.9 306 36.3
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 1.3e-41 174.5 231 47.2
COL.COLO4_06999 Corchorus olitorius HOM05D003289 ORTHO05D004594 6.5e-41 172.2 181 54.1
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 1.1e-37 161.4 120 65.0
Psat7g189880 Pisum sativum HOM05D003289 ORTHO05D004594 3.5e-34 149.8 157 54.1
Psat7g153200 Pisum sativum HOM05D003289 ORTHO05D004594 9.4e-32 141.7 120 59.2
Aqoxy3G01424 Aquilegia oxysepala HOM05D003289 ORTHO05D018396 1.4e-27 127.9 93 64.5
MBI18_g03519_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 8.5e-25 118.6 118 48.3
CBR_g8396 Chara braunii HOM05D003289 ORTHO05D004594 3.6e-23 113.2 209 33.5
Aqoxy4G01245 Aquilegia oxysepala HOM05D003289 ORTHO05D018396 3.0e-22 110.2 93 59.1
MELO3C033806.2 Cucumis melo HOM05D003289 ORTHO05D004594 2.6e-13 80.5 97 45.4
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 9.8e-13 78.6 320 23.4
Os02g0511901 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 2.2e-12 77.4 87 46.0
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 4.1e-11 73.2 259 26.3
MBI18_g36125_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 1.0e-09 68.6 156 30.8
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 2.9e-09 67.0 240 22.9
TPR.G35944 Trifolium pratense HOM05D003289 ORTHO05D004594 2.5e-08 63.9 36 75.0
MBI06_g41845_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 6.1e-07 59.3 156 29.5


User provided reference genes

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