Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 1.4e-63 246.1 122 100.0
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 8.9e-31 137.1 82 81.7
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 7.6e-30 134.0 70 94.3
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 9.9e-30 133.7 74 86.5
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 6.4e-29 131.0 70 90.0
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 6.4e-29 131.0 70 90.0
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 1.9e-28 129.4 70 84.3
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 1.9e-28 129.4 70 84.3
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 1.9e-28 129.4 70 84.3
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 5.4e-28 127.9 70 82.9
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 1.2e-27 126.7 68 85.3
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 1.2e-27 126.7 68 85.3
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 1.5e-25 119.8 70 78.6
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 2.1e-24 115.9 70 77.1
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 2.1e-24 115.9 70 77.1
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 2.1e-24 115.9 70 77.1
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 2.8e-24 115.5 70 72.9
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 2.8e-24 115.5 70 72.9
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 2.8e-24 115.5 70 72.9
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 2.8e-24 115.5 70 75.7
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 3.6e-24 115.2 70 75.7
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 3.6e-24 115.2 70 75.7
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 4.8e-24 114.8 70 75.7
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 4.8e-24 114.8 71 74.6
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 8.1e-24 114.0 70 77.1
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 1.1e-23 113.6 70 74.3
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 1.4e-23 113.2 73 75.3
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 1.4e-23 113.2 71 73.2
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 1.4e-23 113.2 69 76.8
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 1.8e-23 112.8 70 75.7
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 1.8e-23 112.8 72 70.8
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 3.1e-23 112.1 70 71.4
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 3.1e-23 112.1 70 71.4
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 4.0e-23 111.7 70 74.3
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 4.0e-23 111.7 70 74.3
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 4.0e-23 111.7 87 64.4
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 4.0e-23 111.7 70 71.4
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 4.0e-23 111.7 70 71.4
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 5.3e-23 111.3 70 75.7
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 5.3e-23 111.3 70 71.4
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 6.9e-23 110.9 72 70.8
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 6.9e-23 110.9 70 71.4
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 6.9e-23 110.9 70 71.4
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 9.0e-23 110.5 72 69.4
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 9.0e-23 110.5 70 70.0
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 9.0e-23 110.5 70 74.3
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 9.0e-23 110.5 70 74.3
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 9.0e-23 110.5 70 71.4
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 2.0e-22 109.4 70 72.9
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 2.0e-22 109.4 70 71.4
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 2.0e-22 109.4 70 72.9
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 2.6e-22 109.0 70 71.4
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 2.6e-22 109.0 70 71.4
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 2.6e-22 109.0 70 71.4
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 3.4e-22 108.6 58 91.4
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 3.4e-22 108.6 58 91.4
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 4.4e-22 108.2 72 66.7
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 4.4e-22 108.2 62 80.6
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 4.4e-22 108.2 70 70.0
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 5.8e-22 107.8 70 71.4
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 5.8e-22 107.8 70 71.4
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 9.9e-22 107.1 70 68.6
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 9.9e-22 107.1 70 71.4
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 9.9e-22 107.1 73 65.8
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 9.9e-22 107.1 70 70.0
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 1.3e-21 106.7 70 70.0
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.3e-21 106.7 70 68.6
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 2.2e-21 105.9 70 68.6
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 2.2e-21 105.9 70 72.9
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 2.9e-21 105.5 70 71.4
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 2.9e-21 105.5 73 69.9
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 4.9e-21 104.8 70 68.6
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 6.4e-21 104.4 69 69.6
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 6.4e-21 104.4 70 67.1
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 8.4e-21 104.0 69 69.6
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 1.1e-20 103.6 69 66.7
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 2.4e-20 102.4 70 67.1
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 1.2e-19 100.1 70 64.3
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 2.1e-19 99.4 97 55.7
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 3.5e-19 98.6 66 69.7
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 6.0e-19 97.8 69 63.8
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 1.0e-18 97.1 58 74.1
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 1.3e-18 96.7 60 75.0
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 1.7e-18 96.3 62 72.6
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 3.0e-18 95.5 70 67.1
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 6.6e-18 94.4 71 63.4
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 1.1e-17 93.6 69 55.1
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 3.3e-17 92.0 70 62.9
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 3.3e-17 92.0 70 62.9
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 5.6e-17 91.3 70 64.3
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 5.6e-17 91.3 102 49.0
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 7.3e-17 90.9 72 59.7
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 7.3e-17 90.9 69 56.5
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 7.3e-17 90.9 70 61.4
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 1.6e-16 89.7 58 70.7
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 2.1e-16 89.4 63 65.1
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 2.8e-16 89.0 63 65.1
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 1.1e-15 87.0 73 56.2
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 1.1e-15 87.0 58 69.0
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 1.1e-15 87.0 58 69.0
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 1.1e-15 87.0 58 69.0
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 1.8e-15 86.3 74 59.5
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 2.4e-15 85.9 55 70.9
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 3.1e-15 85.5 70 62.9
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 5.3e-15 84.7 60 70.0
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 1.5e-14 83.2 68 48.5
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 2.6e-14 82.4 70 58.6
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 2.6e-14 82.4 57 63.2
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.7e-13 79.7 72 54.2
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 6.4e-13 77.8 71 54.9
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 2.4e-12 75.9 53 64.2
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.0e-10 70.5 60 56.7
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 1.3e-10 70.1 55 63.6
Dinv08998 Davidia involucrata HOM05D007086 ORTHO05D008927 1.1e-09 67.0 74 52.7
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 3.7e-08 62.0 82 42.7
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 8.1e-08 60.8 39 66.7


User provided reference genes

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