Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 2773.4 1367 100.0
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 2007.3 1373 75.1
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1904.0 1436 68.0
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1866.7 1274 74.3
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1817.0 1365 68.3
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1787.7 1367 66.4
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1783.8 1338 67.3
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1775.8 1365 65.4
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1769.2 1370 65.3
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1766.1 1365 65.6
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1762.7 1366 66.2
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1755.7 1367 65.0
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1747.6 1364 65.6
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1729.1 1370 64.2
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1728.0 1364 63.9
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1726.5 1366 64.4
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1718.7 1365 63.8
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1715.7 1369 64.0
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1710.7 1376 64.2
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1708.3 1368 63.2
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1705.3 1368 63.2
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1705.3 1368 62.9
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1697.2 1369 63.2
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1695.2 1377 63.1
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1681.8 1368 61.9
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1679.8 1369 61.9
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1676.0 1368 62.8
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1668.3 1374 61.2
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1666.7 1367 62.7
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1666.0 1370 61.2
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1665.2 1368 61.2
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1665.2 1369 62.2
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1654.4 1365 61.5
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1654.0 1366 61.4
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1652.5 1367 61.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1651.3 1365 61.5
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1649.4 1368 60.9
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1649.0 1365 61.5
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1649.0 1364 61.7
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1648.6 1366 61.5
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1641.7 1332 63.6
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1635.2 1368 60.9
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1631.3 1367 59.9
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1630.5 1392 60.1
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1620.9 1365 59.3
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1619.0 1365 59.6
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1617.8 1360 60.7
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1617.4 1355 60.7
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1617.4 1371 60.0
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1612.8 1366 60.2
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1611.7 1367 60.7
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1609.7 1369 59.8
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1609.0 1369 59.8
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1609.0 1365 59.4
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1607.8 1367 60.2
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1605.5 1365 60.5
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1603.2 1363 59.4
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1599.7 1369 59.8
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1597.0 1367 59.2
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1593.6 1367 59.5
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1583.9 1370 59.3
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1567.4 1377 59.2
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1555.8 1376 58.6
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1554.7 1373 58.6
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1553.9 1134 68.5
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1548.1 1374 58.5
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1545.4 1376 58.6
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1544.3 1376 58.6
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1543.9 1437 55.5
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1543.5 1373 58.3
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1543.1 1368 58.8
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1537.7 1382 58.4
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1534.6 1377 58.3
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1530.4 1374 58.4
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1528.5 1363 57.4
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1526.1 1367 58.2
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1525.0 1373 58.0
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1514.2 1371 57.5
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1512.7 1135 66.8
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1506.5 1314 58.6
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1505.3 1366 57.1
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1491.1 1264 61.4
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1488.4 1366 56.8
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1487.6 1359 55.8
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1483.8 1359 55.6
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1454.5 1371 54.6
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1448.0 1365 55.6
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1434.1 1133 63.9
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1424.1 1369 55.1
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1399.4 1283 58.4
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1343.9 1368 50.9
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1322.8 1373 50.8
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1316.2 1125 60.7
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1278.5 1371 49.8
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1243.4 1365 50.7
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1182.2 1336 48.3
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1169.5 924 64.3
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1144.8 1369 48.0
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 0.0e+00 1137.9 799 74.0
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1131.7 799 71.3
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1101.3 1034 55.9
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1088.2 837 64.9
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 2.1e-309 1066.2 966 55.6
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 2.7e-309 1065.8 924 59.5
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 2.9e-303 1045.8 905 61.0
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.5e-301 1038.9 925 57.5
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.8e-298 1028.5 1035 53.8
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 6.4e-295 1018.1 1390 42.7
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 2.7e-293 1012.7 1430 42.4
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 1.1e-289 1000.7 1293 44.0
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.4e-286 990.3 1419 41.4
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.1e-284 981.9 1035 52.3
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.0e-280 969.9 1425 41.7
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 2.9e-271 939.5 1253 44.5
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.1e-259 901.0 790 58.7
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 3.8e-223 779.6 499 75.4
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.7e-207 727.6 1536 33.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 8.9e-204 715.3 609 59.8
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.1e-193 681.8 677 50.7
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.0e-191 675.2 656 53.7
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.1e-188 663.7 600 57.8
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.5e-174 618.2 461 68.8
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 3.5e-123 447.6 396 61.6
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.1e-116 424.5 360 63.1
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 1.4e-108 399.1 319 63.9
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 7.8e-107 393.3 334 59.6
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.1e-95 356.3 1435 26.6
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 4.6e-75 287.7 1341 24.7
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.5e-70 272.7 260 53.5
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 2.5e-44 185.7 243 46.5
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.8e-42 179.5 148 58.8
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 5.5e-36 157.9 128 61.7
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 2.2e-24 119.4 104 61.5
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 4.8e-24 118.2 76 69.7
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.6e-14 86.7 44 90.9
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.7e-13 83.2 67 58.2
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 4.2e-12 78.6 58 58.6
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 4.0e-10 72.0 48 66.7
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 5.2e-10 71.6 59 61.0
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.6e-09 69.3 135 31.1
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 9.7e-09 67.4 95 36.8
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.3e-08 67.0 202 30.7
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 4.8e-08 65.1 194 30.9
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.8e-07 63.2 94 38.3
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 1.6e-06 60.1 48 62.5
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 1.6e-06 60.1 48 62.5
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 1.6e-06 60.1 48 62.5
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 1.6e-06 60.1 48 62.5
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.6e-06 60.1 79 44.3


User provided reference genes

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