Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10609 Striga asiatica HOM05D002874 ORTHO05D003250 2.0e-75 285.8 153 100.0
Migut.C01326 Erythranthe guttata HOM05D002874 ORTHO05D003250 2.0e-51 206.1 121 87.6
MSTRG.1570 Avicennia marina HOM05D002874 ORTHO05D003250 1.5e-46 189.9 121 81.0
CSS0020391 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 1.4e-44 183.3 121 76.9
Cc10_g09520 Coffea canephora HOM05D002874 ORTHO05D003250 1.4e-44 183.3 121 76.9
CSS0018795 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 2.3e-44 182.6 121 76.9
unitig_37.g13102 Utricularia gibba HOM05D002874 ORTHO05D003250 2.3e-44 182.6 121 75.2
Oeu059197.1 Olea europaea HOM05D002874 ORTHO05D003250 3.4e-43 178.7 120 76.7
MSTRG.25476 Avicennia marina HOM05D002874 ORTHO05D003250 2.8e-42 175.6 119 76.5
CAN.G2.32 Capsicum annuum HOM05D002874 ORTHO05D003250 2.4e-41 172.6 121 71.1
PGSC0003DMG400026730 Solanum tuberosum HOM05D002874 ORTHO05D003250 3.1e-41 172.2 119 71.4
Solyc11g027810.3 Solanum lycopersicum HOM05D002874 ORTHO05D003250 5.4e-41 171.4 121 70.2
Manes.18G106200 Manihot esculenta HOM05D002874 ORTHO05D003250 9.2e-41 170.6 120 70.0
Nitab4.5_0005616g0060 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.6e-40 169.9 121 70.2
Hma1.2p1_0004F.1_g004110 Hydrangea macrophylla HOM05D002874 ORTHO05D003250 2.0e-40 169.5 124 70.2
Potri.019G078800 Populus trichocarpa HOM05D002874 ORTHO05D003250 4.5e-40 168.3 121 70.2
Atru.chr13.2374 Acer truncatum HOM05D002874 ORTHO05D003250 7.7e-40 167.5 123 68.3
Rhsim12G0006100 Rhododendron simsii HOM05D002874 ORTHO05D003250 1.0e-39 167.2 121 67.8
arahy.Tifrunner.gnm1.ann1.ULYQ5U Arachis hypogaea HOM05D002874 ORTHO05D003250 3.8e-39 165.2 131 64.1
Gohir.D05G252200 Gossypium hirsutum HOM05D002874 ORTHO05D003250 5.0e-39 164.9 121 67.8
Gorai.009G265000 Gossypium raimondii HOM05D002874 ORTHO05D003250 5.0e-39 164.9 121 67.8
Gohir.A05G251600 Gossypium hirsutum HOM05D002874 ORTHO05D003250 8.6e-39 164.1 121 66.1
Lalb_Chr15g0080121 Lupinus albus HOM05D002874 ORTHO05D003250 8.6e-39 164.1 120 66.7
arahy.Tifrunner.gnm1.ann1.3TL6MN Arachis hypogaea HOM05D002874 ORTHO05D003250 1.1e-38 163.7 131 63.4
Potri.013G105400 Populus trichocarpa HOM05D002874 ORTHO05D003250 1.1e-38 163.7 121 67.8
AT1G22510 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 1.9e-38 162.9 118 67.8
CiPaw.08G003100 Carya illinoinensis HOM05D002874 ORTHO05D003250 2.5e-38 162.5 121 66.1
HanXRQChr02g0036891 Helianthus annuus HOM05D002874 ORTHO05D003250 3.3e-38 162.2 123 68.3
TWI59G0939 Tripterygium wilfordii HOM05D002874 ORTHO05D003250 3.3e-38 162.2 124 63.7
Carub.0001s2204 Capsella rubella HOM05D002874 ORTHO05D003250 5.6e-38 161.4 113 69.0
GSVIVG01026089001 Vitis vinifera HOM05D002874 ORTHO05D003250 5.6e-38 161.4 121 65.3
Cfa012972 Carpinus fangiana HOM05D002874 ORTHO05D003250 7.3e-38 161.0 121 64.5
CARHR065030 Cardamine hirsuta HOM05D002874 ORTHO05D003250 9.5e-38 160.6 118 66.9
Sp5g27260 Schrenkiella parvula HOM05D002874 ORTHO05D003250 2.1e-37 159.5 111 70.3
Cpa.g.sc66.5 Carica papaya HOM05D002874 ORTHO05D003250 2.8e-37 159.1 123 62.6
Ciclev10002598m.g Citrus clementina HOM05D002874 ORTHO05D003250 3.6e-37 158.7 122 64.8
PGR083G2530 Punica granatum HOM05D002874 ORTHO05D003250 3.6e-37 158.7 121 65.3
THA.LOC104809729 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 3.6e-37 158.7 120 66.7
Aa31LG4G8390 Aethionema arabicum HOM05D002874 ORTHO05D003250 4.7e-37 158.3 118 66.9
CARHR022860 Cardamine hirsuta HOM05D002874 ORTHO05D003250 4.7e-37 158.3 118 64.4
ECA247G4052 Erigeron canadensis HOM05D002874 ORTHO05D003250 4.7e-37 158.3 123 64.2
AT1G72175 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 6.1e-37 157.9 118 66.9
CANSAT56G0379 Cannabis sativa HOM05D002874 ORTHO05D003250 6.1e-37 157.9 123 64.2
CANSAT56G0446 Cannabis sativa HOM05D002874 ORTHO05D003250 6.1e-37 157.9 123 64.2
HanXRQChr04g0101991 Helianthus annuus HOM05D002874 ORTHO05D003250 8.0e-37 157.5 123 65.0
Sc01g0002000 Simmondsia chinensis HOM05D002874 ORTHO05D003250 1.0e-36 157.1 120 63.3
Carub.0002s1898 Capsella rubella HOM05D002874 ORTHO05D003250 1.8e-36 156.4 118 64.4
Eucgr.F04113 Eucalyptus grandis HOM05D002874 ORTHO05D003250 1.8e-36 156.4 121 65.3
Thhalv10019196m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 1.8e-36 156.4 111 68.5
Thhalv10008870m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 2.3e-36 156.0 111 68.5
Hund16773 Selenicereus undatus HOM05D002874 ORTHO05D003250 2.3e-36 156.0 175 52.0
THA.LOC104800136 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 4.0e-36 155.2 118 65.3
Nitab4.5_0001463g0040 Nicotiana tabacum HOM05D002874 ORTHO05D003250 5.2e-36 154.8 121 67.8
A07p14340 Brassica napus HOM05D002874 ORTHO05D003250 6.8e-36 154.5 120 65.0
BolC6t39680H Brassica oleracea HOM05D002874 ORTHO05D003250 6.8e-36 154.5 118 64.4
BcaC06g34971 Brassica carinata HOM05D002874 ORTHO05D003250 8.9e-36 154.1 120 65.0
BolC7t42639H Brassica oleracea HOM05D002874 ORTHO05D003250 8.9e-36 154.1 120 65.0
AL2G31840 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 1.2e-35 153.7 118 65.3
A07p38290 Brassica napus HOM05D002874 ORTHO05D003250 1.2e-35 153.7 118 64.4
BraA07t31393Z Brassica rapa HOM05D002874 ORTHO05D003250 1.2e-35 153.7 118 64.4
Sabra19G0089700 Salix brachista HOM05D002874 ORTHO05D003250 1.2e-35 153.7 139 59.0
BcaB03g14199 Brassica carinata HOM05D002874 ORTHO05D003250 2.0e-35 152.9 120 62.5
CiPaw.07G235400 Carya illinoinensis HOM05D002874 ORTHO05D003250 2.6e-35 152.5 121 62.0
Sabra13G0091100 Salix brachista HOM05D002874 ORTHO05D003250 3.4e-35 152.1 137 59.1
BcaB05g24721 Brassica carinata HOM05D002874 ORTHO05D003250 4.4e-35 151.8 112 66.1
C07p21110 Brassica napus HOM05D002874 ORTHO05D003250 4.4e-35 151.8 120 64.2
BcaC08g46664 Brassica carinata HOM05D002874 ORTHO05D003250 5.7e-35 151.4 118 63.6
C06p46350 Brassica napus HOM05D002874 ORTHO05D003250 5.7e-35 151.4 118 63.6
TAR628G0883 Trochodendron aralioides HOM05D002874 ORTHO05D003250 5.7e-35 151.4 117 65.0
Lj3g0022874 Lotus japonicus HOM05D002874 ORTHO05D003250 1.7e-34 149.8 122 64.8
Nn1g08358 Nelumbo nucifera HOM05D002874 ORTHO05D003250 1.7e-34 149.8 120 59.2
RcHm_v2.0_Chr7g0227111 Rosa chinensis HOM05D002874 ORTHO05D003250 3.7e-34 148.7 121 62.0
ATR0709G075 Amborella trichopoda HOM05D002874 ORTHO05D003250 6.4e-34 147.9 121 56.2
CsaV3_6G002730 Cucumis sativus L. HOM05D002874 ORTHO05D003250 6.4e-34 147.9 117 61.5
Sed0010548 Sechium edule HOM05D002874 ORTHO05D003250 6.4e-34 147.9 120 60.0
MD15G1405300 Malus domestica HOM05D002874 ORTHO05D003250 8.3e-34 147.5 121 62.0
VMungo1080G0651 Vigna mungo HOM05D002874 ORTHO05D003250 3.2e-33 145.6 118 61.0
Aqoxy6G00106 Aquilegia oxysepala HOM05D002874 ORTHO05D003250 4.1e-33 145.2 120 60.0
FvH4_5g31590 Fragaria vesca HOM05D002874 ORTHO05D003250 7.0e-33 144.4 121 57.9
MD08G1217700 Malus domestica HOM05D002874 ORTHO05D003250 7.0e-33 144.4 121 62.0
Haze_21316 Corylus avellana HOM05D002874 ORTHO05D003250 5.9e-32 141.4 162 48.8
Lsat_1_v5_gn_1_25761 Lactuca sativa HOM05D002874 ORTHO05D003250 2.3e-31 139.4 116 62.9
FAN08G3034 Fragaria x ananassa HOM05D002874 ORTHO05D003250 6.6e-31 137.9 121 57.9
MBI17_g21478_MAGBIO Magnolia biondii HOM05D002874 ORTHO05D003250 6.6e-31 137.9 120 53.3
BcaC08g45227 Brassica carinata HOM05D002874 ORTHO05D003250 8.6e-31 137.5 106 65.1
BcaB03g14961 Brassica carinata HOM05D002874 ORTHO05D003250 1.1e-30 137.1 118 60.2
HPP92_003141 Vanilla planifolia HOM05D002874 ORTHO05D003250 1.1e-30 137.1 121 53.7
FAN07G2383 Fragaria x ananassa HOM05D002874 ORTHO05D003250 1.5e-30 136.7 176 47.2
Psat1g008160 Pisum sativum HOM05D002874 ORTHO05D003250 3.3e-30 135.6 113 61.9
Medtr3g005800 Medicago truncatula HOM05D002874 ORTHO05D003250 4.3e-30 135.2 108 62.0
PSO170G2830 Papaver somniferum HOM05D002874 ORTHO05D003250 4.3e-30 135.2 121 56.2
PSO782G4577 Papaver somniferum HOM05D002874 ORTHO05D003250 4.3e-30 135.2 121 56.2
TPR.G25522 Trifolium pratense HOM05D002874 ORTHO05D003250 9.5e-30 134.0 113 58.4
FAN18G1812 Fragaria x ananassa HOM05D002874 ORTHO05D003250 1.2e-29 133.7 120 56.7
Glyma.04G255000 Glycine max HOM05D002874 ORTHO05D003250 1.6e-29 133.3 120 58.3
EL10Ac1g00137 Beta vulgaris HOM05D002874 ORTHO05D003250 3.1e-28 129.0 143 52.4
SEGI_08350 Sequoiadendron giganteum HOM05D002874 ORTHO05D003250 8.9e-28 127.5 121 52.9
BcaB02g07327 Brassica carinata HOM05D002874 ORTHO05D003250 9.8e-27 124.0 109 56.0
Os03g0839000 Oryza sativa ssp. japonica HOM05D002874 ORTHO05D003250 9.8e-27 124.0 111 50.5
Prupe.1G555800 Prunus persica HOM05D002874 ORTHO05D003250 8.3e-26 120.9 121 50.4
AL1G36050 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 3.6e-21 105.5 72 70.8
SMO347G0660 Selaginella moellendorffii HOM05D002874 ORTHO05D003250 4.7e-21 105.1 112 42.9
AagrBONN_evm.TU.Sc2ySwM_362.905 Anthoceros agrestis HOM05D002874 ORTHO05D003250 8.1e-21 104.4 121 41.3
Manes.16G058241 Manihot esculenta HOM05D002874 ORTHO05D003250 8.1e-21 104.4 71 70.4
Pp3c4_27320 Physcomitrium patens HOM05D002874 ORTHO05D003250 8.1e-21 104.4 120 39.2
Duzib211G0598 Durio zibethinus HOM05D002874 ORTHO05D003250 8.9e-20 100.9 121 45.5
Thecc.08G192600 Theobroma cacao HOM05D002874 ORTHO05D003250 1.2e-19 100.5 121 45.5
Duzib116G0473 Durio zibethinus HOM05D002874 ORTHO05D003250 4.4e-19 98.6 121 44.6
Manes.18G106700 Manihot esculenta HOM05D002874 ORTHO05D003250 5.8e-19 98.2 68 67.6
vmacro00978 Vaccinium macrocarpon HOM05D002874 ORTHO05D003250 1.3e-18 97.1 121 45.5
DCAR_017446 Daucus carota HOM05D002874 ORTHO05D003250 1.7e-18 96.7 121 44.6
Mapoly0062s0090 Marchantia polymorpha HOM05D002874 ORTHO05D003250 1.7e-18 96.7 108 42.6
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 4.9e-18 95.1 73 64.4
Peaxi162Scf00688g00428 Petunia axillaris HOM05D002874 ORTHO05D003250 1.1e-17 94.0 72 63.9
AUR62004599 Chenopodium quinoa HOM05D002874 ORTHO05D003250 9.2e-17 90.9 130 45.4
Ah.05g178590 Amaranthus hybridus HOM05D002874 ORTHO05D003250 3.5e-16 89.0 120 41.7
CDE02G1341 Ceratophyllum demersum HOM05D002874 ORTHO05D003250 4.6e-16 88.6 112 42.0
AUR62023545 Chenopodium quinoa HOM05D002874 ORTHO05D003250 1.3e-15 87.0 130 43.8
HanXRQChr01g0023581 Helianthus annuus HOM05D002874 ORTHO05D003250 1.7e-15 86.7 69 63.8
SHI08997 Sapria himalayana HOM05D002874 ORTHO05D003250 1.7e-15 86.7 85 51.8
Haze_21322 Corylus avellana HOM05D002874 ORTHO05D003250 5.1e-15 85.1 174 34.5
HanXRQChr16g0501851 Helianthus annuus HOM05D002874 ORTHO05D003250 3.6e-13 79.0 69 60.9
COL.COLO4_24649 Corchorus olitorius HOM05D002874 ORTHO05D003250 1.8e-12 76.6 53 66.0
ClCG08G002480 Citrullus lanatus HOM05D002874 ORTHO05D003250 3.1e-12 75.9 52 63.5
CBR_g38544 Chara braunii HOM05D002874 ORTHO05D003250 5.2e-12 75.1 106 34.0
MELO3C025008.2 Cucumis melo HOM05D002874 ORTHO05D003250 1.5e-11 73.6 64 56.2
Haze_21319 Corylus avellana HOM05D002874 ORTHO05D003250 5.8e-11 71.6 64 53.1
Gohir.D01G006200 Gossypium hirsutum HOM05D002874 ORTHO05D003250 6.4e-10 68.2 113 32.7
COL.COLO4_11715 Corchorus olitorius HOM05D002874 ORTHO05D003250 8.4e-10 67.8 112 33.0
CSS0000541 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 1.1e-09 67.4 106 32.1
CSS0036415 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 1.1e-09 67.4 106 32.1
CARHR242040 Cardamine hirsuta HOM05D002874 ORTHO05D003250 4.1e-09 65.5 112 33.9
Ciclev10029827m.g Citrus clementina HOM05D002874 ORTHO05D003250 4.1e-09 65.5 103 34.0
Thecc.02G096400 Theobroma cacao HOM05D002874 ORTHO05D003250 4.1e-09 65.5 111 32.4
Gorai.002G007200 Gossypium raimondii HOM05D002874 ORTHO05D003250 5.4e-09 65.1 114 32.5
Cpa.g.sc62.42 Carica papaya HOM05D002874 ORTHO05D003250 7.1e-09 64.7 115 33.0
Gohir.D13G036400 Gossypium hirsutum HOM05D002874 ORTHO05D003250 7.1e-09 64.7 118 30.5
BcaNung04335 Brassica carinata HOM05D002874 ORTHO05D003250 2.1e-08 63.2 119 33.6
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 2.1e-08 63.2 123 30.1
Gorai.013G041100 Gossypium raimondii HOM05D002874 ORTHO05D003250 2.1e-08 63.2 118 29.7
Atru.chr5.2783 Acer truncatum HOM05D002874 ORTHO05D003250 2.7e-08 62.8 112 31.2
Atru.chr5.2798 Acer truncatum HOM05D002874 ORTHO05D003250 2.7e-08 62.8 112 31.2
Gohir.A13G038000 Gossypium hirsutum HOM05D002874 ORTHO05D003250 2.7e-08 62.8 112 29.5
Medtr3g005790 Medicago truncatula HOM05D002874 ORTHO05D003250 2.7e-08 62.8 60 50.0
Gohir.A01G006100 Gossypium hirsutum HOM05D002874 ORTHO05D003250 3.5e-08 62.4 87 35.6
Manes.15G142950 Manihot esculenta HOM05D002874 ORTHO05D003250 3.5e-08 62.4 125 30.4
THA.LOC104807351 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 7.8e-08 61.2 118 28.0
Dinv11063 Davidia involucrata HOM05D002010 ORTHO05D001602 1.3e-07 60.5 38 73.7
Sp7g31670 Schrenkiella parvula HOM05D002874 ORTHO05D003250 1.7e-07 60.1 112 31.2
BcaC08g45229 Brassica carinata HOM05D002874 ORTHO05D003250 2.3e-07 59.7 108 37.0
BolC7t46446H Brassica oleracea HOM05D002874 ORTHO05D003250 2.3e-07 59.7 119 31.1
Nitab4.5_0008546g0040 Nicotiana tabacum HOM05D002874 ORTHO05D003250 3.0e-07 59.3 131 35.1
TWI75G1683 Tripterygium wilfordii HOM05D002874 ORTHO05D003250 3.0e-07 59.3 119 29.4
A03p62460 Brassica napus HOM05D002874 ORTHO05D003250 3.9e-07 58.9 119 30.3
BraA03t15313Z Brassica rapa HOM05D002874 ORTHO05D003250 3.9e-07 58.9 119 30.3
BcaNung02905 Brassica carinata HOM05D002874 ORTHO05D003250 5.1e-07 58.5 112 32.1
C07p60060 Brassica napus HOM05D002874 ORTHO05D003250 5.1e-07 58.5 112 32.1
A01p04460 Brassica napus HOM05D002874 ORTHO05D003250 8.6e-07 57.8 112 32.1
BraA01t00433Z Brassica rapa HOM05D002874 ORTHO05D003250 8.6e-07 57.8 112 32.1
Medtr2g094040 Medicago truncatula HOM05D002874 ORTHO05D003250 1.1e-06 57.4 69 40.6
AL7G17480 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 1.5e-06 57.0 112 30.4
Thhalv10026077m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 1.5e-06 57.0 112 31.2
ECA240G2758 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.9e-06 56.6 116 35.3
Nitab4.5_0007966g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.9e-06 56.6 132 31.8
HanXRQChr03g0065221 Helianthus annuus HOM05D002874 ORTHO05D003250 3.3e-06 55.8 126 31.7
C01p04850 Brassica napus HOM05D002874 ORTHO05D003250 4.3e-06 55.5 112 31.2
BolC1t00469H Brassica oleracea HOM05D002874 ORTHO05D003250 4.3e-06 55.5 112 31.2
Carub.0007s0648 Capsella rubella HOM05D002874 ORTHO05D003250 4.3e-06 55.5 112 30.4
Nitab4.5_0008546g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 4.3e-06 55.5 119 30.3
Eucgr.I01172 Eucalyptus grandis HOM05D002874 ORTHO05D003250 7.3e-06 54.7 109 29.4
Lsat_1_v5_gn_7_78981 Lactuca sativa HOM05D002874 ORTHO05D003250 7.3e-06 54.7 130 29.2
Solyc01g103980.4 Solanum lycopersicum HOM05D002874 ORTHO05D003250 7.3e-06 54.7 119 30.3
Sopen01g046380 Solanum pennellii HOM05D002874 ORTHO05D003250 7.3e-06 54.7 119 30.3
PGSC0003DMG400023800 Solanum tuberosum HOM05D002874 ORTHO05D003250 7.3e-06 54.7 119 30.3


User provided reference genes

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