Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 0.0e+00 1466.8 767 100.0
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 2.7e-117 427.2 641 45.6
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 6.5e-111 406.0 667 44.1
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 1.8e-105 387.9 711 39.8
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 4.5e-88 330.1 608 38.8
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.2e-69 268.9 618 34.6
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 6.6e-63 246.5 664 33.6
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 2.5e-62 244.6 702 32.5
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.6e-61 241.9 601 35.9
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 1.1e-60 239.2 522 36.6
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.9e-58 231.1 644 32.3
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 7.0e-57 226.5 641 32.6
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 1.0e-55 222.6 632 31.5
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 1.3e-55 222.2 632 31.8
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 8.6e-55 219.5 621 31.9
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 1.1e-54 219.2 638 31.3
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 1.5e-54 218.8 606 31.7
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 9.5e-54 216.1 635 31.3
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 9.5e-54 216.1 709 28.2
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.1e-52 212.6 767 28.0
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 1.4e-52 212.2 705 31.9
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 1.4e-52 212.2 668 32.0
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 4.0e-52 210.7 780 27.9
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 5.2e-52 210.3 625 31.7
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 2.6e-51 208.0 705 29.5
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 5.8e-51 206.8 682 30.4
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 7.5e-51 206.5 774 26.7
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 7.5e-51 206.5 673 29.6
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 9.9e-51 206.1 638 32.1
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 1.1e-49 202.6 774 27.8
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 1.9e-49 201.8 692 29.9
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 1.9e-49 201.8 634 32.3
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 3.2e-49 201.1 427 35.4
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 6.0e-48 196.8 663 30.0
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 2.3e-47 194.9 685 28.2
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 3.9e-47 194.1 426 35.4
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 3.9e-47 194.1 716 29.1
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 5.6e-46 190.3 666 29.6
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 1.8e-44 185.3 446 34.5
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 4.0e-44 184.1 698 26.1
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 5.2e-44 183.7 655 28.7
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 1.2e-43 182.6 685 28.0
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 1.5e-43 182.2 632 29.9
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.4e-43 181.0 707 29.1
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 4.4e-43 180.6 818 27.0
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 5.8e-43 180.3 751 26.6
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 5.8e-43 180.3 693 26.7
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 2.2e-42 178.3 793 26.6
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 2.2e-42 178.3 719 28.7
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 4.9e-42 177.2 645 28.5
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 6.4e-42 176.8 714 26.8
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 1.1e-41 176.0 673 28.1
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 1.4e-41 175.6 686 27.3
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.2e-41 174.5 711 29.0
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 7.1e-41 173.3 631 29.2
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 2.7e-40 171.4 724 27.8
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.3e-39 168.3 686 27.3
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 5.1e-39 167.2 708 27.5
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 1.9e-38 165.2 730 26.7
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 1.9e-38 165.2 626 28.0
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 1.6e-37 162.2 649 28.2
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.4e-36 159.1 500 31.0
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 2.4e-36 158.3 701 28.0
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 2.4e-36 158.3 659 28.2
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 9.0e-36 156.4 737 25.9
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 1.2e-35 156.0 741 27.0
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 1.5e-35 155.6 662 28.5
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 1.5e-35 155.6 605 28.1
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 2.0e-35 155.2 627 28.7
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 3.4e-35 154.5 611 27.0
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 3.4e-35 154.5 713 26.9
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 2.2e-34 151.8 754 24.3
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 3.8e-34 151.0 731 26.0
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 3.8e-34 151.0 721 26.6
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 8.4e-34 149.8 628 27.9
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 1.1e-33 149.4 585 29.2
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 1.4e-33 149.1 626 26.7
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 1.0e-31 142.9 413 30.0
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.0e-31 142.9 674 28.6
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 1.0e-31 142.9 738 26.7
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 2.3e-31 141.7 445 30.3
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 6.6e-31 140.2 461 29.3
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.1e-30 139.4 718 27.0
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 4.3e-30 137.5 422 31.0
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 1.6e-29 135.6 710 25.9
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 2.8e-29 134.8 412 29.4
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.6e-29 134.4 512 28.9
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 8.1e-29 133.3 282 35.8
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 8.1e-29 133.3 412 28.9
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 1.1e-28 132.9 412 29.1
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 1.4e-28 132.5 221 38.9
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 4.0e-28 131.0 436 27.8
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 1.2e-27 129.4 413 29.3
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 4.5e-27 127.5 425 28.9
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 1.4e-25 122.5 440 30.0
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 7.1e-25 120.2 138 46.4
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 2.7e-24 118.2 95 60.0
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 6.7e-23 113.6 95 55.8
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 9.6e-22 109.8 207 34.3
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 2.1e-21 108.6 162 42.6
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 4.8e-21 107.5 600 26.0
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 1.6e-16 92.4 128 38.3
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 4.6e-16 90.9 146 36.3
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 4.6e-16 90.9 122 41.0
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.3e-15 89.4 180 38.3
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 1.8e-15 89.0 621 23.3
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 5.6e-14 84.0 481 24.3
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 9.6e-14 83.2 548 25.2
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 4.8e-13 80.9 359 24.5
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.4e-12 79.3 156 37.2
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 5.3e-12 77.4 196 32.1
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 4.5e-11 74.3 228 26.3
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 2.2e-10 72.0 59 57.6
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 6.5e-10 70.5 78 43.6
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 1.1e-09 69.7 498 24.7
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 7.1e-09 67.0 160 33.1
PGSC0003DMG400026892 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.0e-07 63.2 83 37.3
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 3.0e-07 61.6 76 46.1
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 5.1e-07 60.8 71 46.5
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 5.1e-07 60.8 91 41.8
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 6.7e-07 60.5 76 44.7
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 6.7e-07 60.5 76 44.7
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 3.3e-06 58.2 325 22.5


User provided reference genes

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