Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 3.3e-208 728.4 439 100.0
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.4e-78 295.8 455 45.3
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 1.2e-74 284.6 454 45.8
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 8.4e-71 271.9 467 44.1
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 2.1e-69 267.3 452 49.8
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 5.3e-65 252.7 456 39.7
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 6.9e-65 252.3 449 42.1
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 1.7e-63 247.7 498 39.0
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 1.9e-62 244.2 482 43.4
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 2.4e-62 243.8 452 45.6
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 5.4e-62 242.7 453 42.6
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 9.3e-62 241.9 452 40.0
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 1.2e-61 241.5 453 40.4
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.7e-61 240.4 458 43.9
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 4.6e-61 239.6 491 39.3
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.0e-60 238.4 436 43.1
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.3e-60 238.0 460 40.2
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 2.3e-60 237.3 463 41.5
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 3.0e-60 236.9 460 40.7
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 3.0e-60 236.9 478 44.1
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 3.9e-60 236.5 459 44.0
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 3.3e-59 233.4 460 41.3
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 5.6e-59 232.6 456 42.8
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 5.6e-59 232.6 450 38.9
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 5.6e-59 232.6 307 53.1
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 7.3e-59 232.3 469 40.7
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 1.3e-58 231.5 446 41.0
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 1.3e-58 231.5 460 37.4
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 1.3e-58 231.5 328 48.5
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 1.4e-57 228.0 458 42.1
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 1.4e-57 228.0 453 40.6
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 1.2e-56 224.9 343 44.3
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 1.5e-56 224.6 449 40.5
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 1.3e-55 221.5 436 41.5
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 2.9e-55 220.3 442 39.6
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 1.2e-53 214.9 460 39.3
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 2.1e-53 214.2 451 39.0
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 2.7e-53 213.8 268 52.2
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 3.5e-53 213.4 455 41.1
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 1.3e-52 211.5 436 41.7
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 1.8e-52 211.1 462 40.0
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 3.9e-52 209.9 469 39.0
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 3.9e-52 209.9 458 37.1
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 5.1e-52 209.5 460 42.0
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 6.7e-52 209.1 447 47.2
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 8.7e-52 208.8 466 39.3
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 4.3e-51 206.5 445 42.2
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 7.4e-51 205.7 474 35.0
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 7.4e-51 205.7 457 40.9
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 1.3e-50 204.9 445 39.6
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.3e-50 204.9 493 36.5
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 1.6e-50 204.5 267 44.9
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 2.1e-50 204.1 494 36.6
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 3.7e-50 203.4 453 38.2
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 1.4e-49 201.4 441 44.0
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 3.1e-49 200.3 461 38.0
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 3.1e-49 200.3 442 40.3
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.2e-48 198.4 360 39.7
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 2.0e-48 197.6 456 40.1
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.8e-48 196.1 467 34.0
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 2.2e-47 194.1 478 34.7
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 3.8e-47 193.4 453 37.3
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 7.1e-46 189.1 293 45.1
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 9.3e-46 188.7 458 40.4
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 1.2e-45 188.3 560 30.7
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 6.0e-45 186.0 259 46.3
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 6.0e-45 186.0 471 38.6
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 1.8e-44 184.5 268 49.3
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 2.3e-44 184.1 456 45.2
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 4.3e-43 179.9 493 32.5
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.3e-42 178.3 325 37.8
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 1.6e-42 177.9 456 39.9
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 1.6e-42 177.9 472 35.0
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 3.7e-42 176.8 418 34.0
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 8.2e-42 175.6 447 43.2
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.1e-41 175.3 393 36.4
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.8e-41 174.5 232 41.8
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 2.4e-41 174.1 482 34.4
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 4.1e-41 173.3 442 40.7
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 6.9e-41 172.6 451 40.1
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 2.6e-40 170.6 477 43.0
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 4.5e-40 169.9 483 34.6
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 1.0e-39 168.7 489 37.4
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 2.2e-39 167.5 369 37.7
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 8.4e-39 165.6 452 38.7
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 8.4e-39 165.6 339 37.2
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 2.1e-37 161.0 471 36.5
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 1.8e-36 157.9 470 35.5
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 2.3e-36 157.5 340 39.1
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 1.4e-33 148.3 458 33.8
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 2.9e-31 140.6 446 41.3
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 9.4e-30 135.6 302 38.4
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 7.9e-29 132.5 460 30.4
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 3.8e-23 113.6 447 30.0
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 6.5e-23 112.8 106 50.0
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 6.7e-20 102.8 451 28.6
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 2.6e-16 90.9 344 42.4
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 6.5e-15 86.3 267 35.2
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.9e-14 84.7 88 60.2
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.2e-14 83.6 89 60.7
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.7e-13 80.9 63 61.9
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.7e-13 80.9 63 61.9
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 2.3e-12 77.8 260 35.0
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.3e-11 73.9 44 70.5
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.3e-11 73.9 44 70.5
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 8.2e-10 69.3 301 28.9
Cre06.g254700 Chlamydomonas reinhardtii HOM05D007201 ORTHO05D009122 1.7e-07 61.6 56 48.2
Ah.11g043520 Amaranthus hybridus HOM05D000145 ORTHO05D000115 5.0e-07 60.1 37 75.7


User provided reference genes

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