Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 0.0e+00 1439.9 730 100.0
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1147.1 729 82.2
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1086.2 725 78.3
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1080.1 728 77.7
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1078.2 728 77.7
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1077.8 725 77.2
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 1.0e-311 1072.8 722 77.8
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 2.5e-311 1071.6 722 76.3
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 2.5e-311 1071.6 724 77.2
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 3.5e-311 1071.2 736 76.5
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 6.0e-311 1070.5 732 75.8
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 3.8e-310 1067.8 731 75.2
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 4.9e-310 1067.4 725 77.7
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 8.4e-310 1066.6 726 77.0
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 1.9e-309 1065.4 726 76.7
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 5.5e-309 1063.9 731 75.4
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 7.1e-309 1063.5 725 76.4
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 1.8e-307 1058.9 725 75.3
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.3e-307 1058.5 748 75.5
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 3.9e-307 1057.7 726 76.3
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 6.7e-307 1057.0 722 75.6
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 8.7e-307 1056.6 722 75.5
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 8.7e-307 1056.6 725 76.3
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 1.9e-306 1055.4 722 75.5
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 5.6e-306 1053.9 733 74.6
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 9.6e-306 1053.1 727 74.6
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 1.8e-304 1048.9 725 76.1
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 2.4e-304 1048.5 729 74.6
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.3e-302 1042.7 725 75.3
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 1.3e-302 1042.7 729 74.9
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.3e-302 1042.7 735 76.2
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 2.9e-302 1041.6 715 75.0
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 2.9e-302 1041.6 731 74.1
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 4.9e-302 1040.8 729 74.8
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 6.5e-302 1040.4 729 74.8
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 8.4e-302 1040.0 726 74.9
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 2.5e-301 1038.5 735 73.3
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 2.5e-301 1038.5 723 75.2
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 1.6e-300 1035.8 725 74.9
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 2.1e-300 1035.4 734 74.3
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 2.7e-300 1035.0 728 74.9
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 6.0e-300 1033.9 729 72.8
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 1.1e-298 1029.6 731 73.6
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.5e-298 1029.2 718 75.2
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 2.1e-297 1025.4 715 74.4
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 2.1e-297 1025.4 696 74.9
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 2.1e-297 1025.4 696 74.9
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 2.8e-297 1025.0 724 74.0
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 4.8e-297 1024.2 727 74.1
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 6.3e-297 1023.8 758 70.8
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 1.1e-296 1023.1 733 73.0
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 1.8e-296 1022.3 725 74.2
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 1.2e-295 1019.6 719 73.4
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 2.0e-295 1018.8 733 72.2
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 5.9e-295 1017.3 767 70.7
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 2.9e-294 1015.0 687 76.1
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 6.5e-294 1013.8 744 72.0
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 5.5e-293 1010.7 739 71.9
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 3.0e-291 1005.0 721 71.8
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 3.9e-291 1004.6 713 72.4
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 5.1e-291 1004.2 713 72.2
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 8.7e-291 1003.4 730 71.0
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 1.5e-290 1002.7 730 70.8
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 4.3e-290 1001.1 721 71.4
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 5.7e-290 1000.7 731 72.0
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 1.6e-289 999.2 727 71.0
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 8.2e-289 996.9 743 70.0
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 1.1e-288 996.5 720 71.4
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 1.1e-288 996.5 740 70.3
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 4.1e-288 994.6 779 69.4
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 1.2e-287 993.0 723 70.5
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 2.0e-287 992.3 724 70.9
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.0e-287 992.3 723 71.2
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 2.6e-287 991.9 724 70.6
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 2.5e-285 985.3 687 74.2
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 1.2e-284 983.0 748 69.1
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 3.9e-283 978.0 705 71.1
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 2.6e-282 975.3 724 71.1
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 4.1e-272 941.4 756 67.3
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 5.0e-270 934.5 726 70.1
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.5e-269 932.2 710 69.0
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 2.8e-265 918.7 582 79.0
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.1e-261 906.7 593 78.2
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 6.1e-260 901.0 722 67.9
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 2.8e-257 892.1 592 75.3
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.0e-254 883.6 727 67.0
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 5.0e-254 881.3 508 85.8
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.5e-253 879.8 707 67.6
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.2e-252 876.7 671 67.7
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 4.9e-249 864.8 698 65.2
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 4.1e-248 861.7 716 62.8
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 8.0e-244 847.4 692 63.9
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 1.0e-243 847.0 687 63.3
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 1.6e-239 833.2 733 63.3
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.7e-236 821.6 688 64.5
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.9e-224 783.1 755 58.7
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.4e-224 782.7 443 86.2
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.5e-221 773.5 754 57.8
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 5.8e-210 734.9 466 76.2
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 6.9e-187 658.3 708 51.7
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 3.3e-181 639.4 393 79.1
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 9.1e-171 604.7 600 55.8
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 3.9e-166 589.3 716 46.9
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.4e-163 580.9 420 74.0
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 9.1e-163 578.2 427 72.6
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.2e-162 577.8 441 71.7
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 6.1e-159 565.5 693 47.6
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 1.8e-155 553.9 423 70.7
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 6.1e-143 512.3 302 84.1
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.8e-140 503.4 308 82.8
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.5e-136 491.1 307 82.1
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 9.2e-131 471.9 689 44.7
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.1e-128 464.9 415 63.1
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 6.6e-113 412.5 294 73.1
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 3.5e-106 390.2 516 46.3
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 4.5e-77 293.5 212 73.6
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.2e-76 291.2 217 70.5
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 3.2e-59 234.2 176 68.8
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 3.8e-52 210.7 218 55.5
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 7.9e-50 203.0 104 91.3
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 3.0e-49 201.1 218 51.4
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 3.0e-49 201.1 281 48.4
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 1.5e-45 188.7 180 59.4
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 2.6e-37 161.4 136 59.6
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 2.9e-36 157.9 127 63.0
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 8.0e-34 149.8 469 32.2
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 1.0e-33 149.4 87 80.5
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.4e-33 149.1 87 80.5
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.2e-32 146.0 87 79.3
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 2.4e-30 138.3 107 63.6
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 8.0e-26 123.2 135 56.3
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.3e-25 121.7 113 58.4
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 6.3e-23 113.6 134 51.5
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.1e-19 102.8 80 72.5
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 7.2e-19 100.1 54 88.9
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 8.0e-18 96.7 55 83.6
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 5.2e-17 94.0 88 61.4
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 6.8e-17 93.6 94 58.5
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-14 86.3 201 33.8
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 2.4e-14 85.1 112 53.6
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.0e-12 79.7 68 52.9
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 2.9e-12 78.2 75 61.3
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 1.9e-11 75.5 134 40.3
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 4.3e-11 74.3 62 69.4
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 3.6e-10 71.2 146 37.7
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 6.1e-10 70.5 84 51.2
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 6.8e-09 67.0 111 42.3
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 8.9e-09 66.6 37 83.8
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.2e-08 66.2 66 50.0
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 5.8e-08 63.9 50 60.0
arahy.Tifrunner.gnm1.ann1.T563W8 Arachis hypogaea HOM05D000316 ORTHO05D014896 2.9e-07 61.6 84 51.2
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 3.7e-07 61.2 35 82.9
PGSC0003DMG402017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 8.3e-07 60.1 45 73.3
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 1.4e-06 59.3 35 85.7
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.4e-06 59.3 40 67.5
arahy.Tifrunner.gnm1.ann1.J8YEXM Arachis hypogaea HOM05D004763 ORTHO05D014896 4.1e-06 57.8 36 80.6
arahy.Tifrunner.gnm1.ann1.NDK424 Arachis hypogaea HOM05D000919 ORTHO05D014896 9.2e-06 56.6 29 93.1
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 9.2e-06 56.6 41 63.4


User provided reference genes

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