Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 7.6e-118 427.2 213 100.0
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 2.2e-85 319.3 196 80.6
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 1.4e-84 316.6 198 80.3
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 1.2e-83 313.5 195 80.5
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 4.1e-79 298.5 199 74.9
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 5.3e-79 298.1 199 75.4
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 7.6e-78 294.3 199 74.4
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.2e-77 292.7 198 74.7
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.2e-77 292.7 198 74.7
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.2e-75 287.0 197 74.1
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.2e-75 287.0 200 70.5
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 1.6e-75 286.6 198 73.7
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 2.1e-75 286.2 190 74.7
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 2.7e-75 285.8 197 72.1
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 6.1e-75 284.6 191 75.4
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.8e-74 283.1 202 71.3
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 3.0e-74 282.3 194 74.2
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 3.0e-74 282.3 200 73.0
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 6.7e-74 281.2 198 70.7
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 6.7e-74 281.2 194 75.3
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 6.7e-74 281.2 194 71.6
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.5e-73 280.0 197 73.1
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 5.7e-73 278.1 195 70.3
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 9.7e-73 277.3 195 69.2
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.3e-72 276.9 191 71.7
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.3e-72 276.9 199 70.4
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.3e-72 276.9 197 69.0
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.6e-72 276.6 197 69.0
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 2.2e-72 276.2 199 69.3
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 3.7e-72 275.4 199 69.3
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.8e-72 275.0 197 71.1
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 4.8e-72 275.0 199 69.3
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 8.2e-72 274.2 196 71.9
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 8.2e-72 274.2 197 70.6
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.1e-71 273.9 199 68.8
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 1.4e-71 273.5 199 70.4
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.8e-71 273.1 197 70.6
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 2.4e-71 272.7 231 63.2
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 4.1e-71 271.9 199 67.8
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 6.9e-71 271.2 197 71.1
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.5e-70 270.0 196 70.4
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 1.5e-70 270.0 195 68.7
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 2.0e-70 269.6 196 68.4
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 2.6e-70 269.2 190 69.5
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 2.6e-70 269.2 195 69.2
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 3.4e-70 268.9 199 67.8
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.5e-70 268.5 197 69.5
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 4.5e-70 268.5 196 67.9
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 4.5e-70 268.5 197 68.0
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.3e-69 266.9 199 67.8
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 2.2e-69 266.2 199 66.8
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 8.5e-69 264.2 194 67.5
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.1e-68 263.8 199 68.8
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.1e-68 263.8 201 66.2
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 1.1e-68 263.8 194 67.5
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.1e-68 263.8 194 68.6
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 1.9e-68 263.1 197 68.0
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 2.5e-68 262.7 195 68.7
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 2.5e-68 262.7 193 65.8
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 3.2e-68 262.3 194 67.0
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 3.2e-68 262.3 197 67.5
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 5.5e-68 261.5 223 63.2
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.5e-68 261.5 199 67.8
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 9.4e-68 260.8 199 68.3
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.4e-68 260.8 199 68.3
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.2e-67 260.4 200 63.5
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.6e-67 260.0 197 66.5
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.1e-67 259.6 199 67.3
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.1e-67 259.6 194 66.5
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 3.6e-67 258.8 163 78.5
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.6e-67 258.8 194 67.0
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 4.6e-67 258.5 193 66.8
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.4e-66 256.9 204 63.7
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.4e-66 256.9 194 66.5
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 2.3e-66 256.1 197 67.5
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 3.0e-66 255.8 194 66.5
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 6.7e-66 254.6 197 65.5
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.7e-66 254.6 195 65.6
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 8.8e-66 254.2 193 67.4
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 2.5e-65 252.7 198 63.6
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 2.5e-65 252.7 194 66.0
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.3e-65 252.3 199 61.3
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.3e-64 250.4 193 63.7
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.3e-64 250.4 195 64.6
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.2e-64 249.6 195 64.6
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 2.8e-64 249.2 193 63.2
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 4.8e-64 248.4 193 63.2
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 6.3e-64 248.1 193 62.7
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.1e-63 247.3 193 62.7
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.4e-63 246.9 193 62.7
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.8e-63 246.5 190 65.3
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.4e-63 246.1 193 61.7
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 2.4e-63 246.1 187 63.6
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 3.1e-63 245.7 186 68.3
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 4.1e-63 245.4 192 66.1
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 6.9e-63 244.6 198 63.6
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 9.1e-63 244.2 193 64.8
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.5e-62 243.4 193 62.2
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 2.6e-62 242.7 193 62.2
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 6.5e-61 238.0 190 64.2
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 6.5e-61 238.0 193 60.6
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 6.5e-61 238.0 187 63.1
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 1.1e-60 237.3 194 59.3
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 4.2e-60 235.3 194 61.3
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 7.2e-60 234.6 193 58.5
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.4e-60 234.2 193 58.5
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 2.7e-59 232.6 199 60.3
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 9.7e-57 224.2 192 56.8
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.1e-55 220.7 161 67.7
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.1e-55 220.7 189 59.8
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 2.4e-55 219.5 179 60.9
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 5.3e-55 218.4 195 56.4
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 9.1e-55 217.6 142 73.2
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.2e-54 217.2 195 56.9
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 1.0e-53 214.2 187 61.0
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 3.6e-51 205.7 190 57.9
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 8.0e-51 204.5 187 56.1
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 8.8e-50 201.1 193 56.0
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 7.0e-47 191.4 187 54.0
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 2.2e-45 186.4 145 65.5
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.2e-43 180.6 149 62.4
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 6.8e-42 174.9 191 43.5
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.8e-40 168.7 177 52.0
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 1.1e-39 167.5 187 47.1
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 7.0e-39 164.9 98 76.5
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 9.1e-39 164.5 172 50.6
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 3.5e-38 162.5 114 71.1
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.7e-37 160.2 166 53.0
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 6.1e-35 151.8 204 40.2
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 7.5e-33 144.8 187 45.5
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.6e-30 137.1 133 51.9
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.5e-30 135.6 143 48.3
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 4.3e-28 129.0 186 37.1
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 6.8e-26 121.7 192 38.5
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 3.0e-21 106.3 192 38.0
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 6.2e-19 98.6 181 35.9
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.0e-18 95.9 101 47.5
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 8.9e-18 94.7 171 32.7
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.5e-17 94.0 128 42.2
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 4.4e-17 92.4 147 38.1
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 5.8e-17 92.0 75 62.7
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 5.8e-17 92.0 75 62.7
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 7.5e-17 91.7 47 93.6
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 2.2e-16 90.1 75 61.3
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 4.7e-11 72.4 94 40.4
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 4.7e-11 72.4 59 64.4
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 6.2e-11 72.0 117 43.6
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 5.2e-10 68.9 42 81.0
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 1.3e-08 64.3 51 64.7
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 2.9e-08 63.2 60 55.0


User provided reference genes

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