Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 1.1e-226 789.6 410 100.0
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 1.0e-171 607.1 413 78.0
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 1.7e-166 589.7 410 76.1
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 6.4e-166 587.8 408 76.0
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 8.7e-155 550.8 415 71.1
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 6.5e-150 534.6 415 68.7
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 1.1e-146 523.9 434 65.2
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 2.8e-145 519.2 415 66.7
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 2.6e-143 512.7 417 65.7
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 5.9e-143 511.5 411 66.4
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 7.7e-143 511.1 430 64.7
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 1.0e-142 510.8 418 65.1
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 3.8e-142 508.8 416 65.4
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 6.5e-142 508.1 409 65.5
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 8.5e-142 507.7 411 65.7
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 5.5e-141 505.0 414 65.2
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.6e-140 503.4 421 65.1
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 3.6e-140 502.3 422 64.7
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 4.6e-140 501.9 403 66.5
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 7.9e-140 501.1 510 57.8
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 1.4e-139 500.4 411 66.2
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 1.4e-139 500.4 411 66.2
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 3.0e-139 499.2 417 65.7
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 3.0e-139 499.2 421 65.3
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 3.9e-139 498.8 407 64.9
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 6.7e-139 498.0 417 65.5
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 1.1e-138 497.3 416 63.9
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 2.0e-138 496.5 410 65.4
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 2.0e-138 496.5 417 65.2
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 2.5e-138 496.1 410 65.1
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 4.3e-138 495.4 429 63.9
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 7.4e-138 494.6 428 63.3
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 1.3e-137 493.8 414 64.7
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 1.3e-137 493.8 429 63.9
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 1.3e-137 493.8 427 64.6
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 2.8e-137 492.7 529 55.2
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 4.8e-137 491.9 417 64.7
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 6.3e-137 491.5 389 66.6
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 8.2e-137 491.1 403 65.5
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 1.1e-136 490.7 405 64.4
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 2.4e-136 489.6 413 63.0
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 1.5e-135 486.9 402 65.7
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 1.0e-134 484.2 359 71.3
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 2.2e-134 483.0 410 64.6
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 6.5e-134 481.5 428 64.3
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 8.5e-134 481.1 418 63.4
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 3.2e-133 479.2 409 65.3
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 4.2e-133 478.8 386 65.0
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 1.2e-132 477.2 429 61.3
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 4.7e-132 475.3 428 62.1
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 2.3e-131 473.0 422 63.7
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 1.5e-130 470.3 423 63.4
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 7.4e-130 468.0 419 61.6
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 1.7e-129 466.8 386 65.0
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 4.1e-128 462.2 408 63.5
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 5.3e-128 461.8 405 63.0
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 1.2e-127 460.7 424 60.4
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 3.5e-127 459.1 429 59.2
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 5.9e-127 458.4 481 55.1
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 7.7e-127 458.0 419 61.6
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 2.9e-126 456.1 417 61.2
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 1.5e-125 453.8 498 54.0
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 2.5e-125 453.0 428 58.9
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 3.2e-125 452.6 429 59.0
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 1.6e-124 450.3 431 58.5
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 3.9e-123 445.7 394 63.5
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 8.8e-123 444.5 414 60.6
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 3.3e-122 442.6 378 63.5
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 2.2e-121 439.9 425 58.4
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 5.9e-119 431.8 416 59.1
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.0e-118 431.0 418 59.3
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 6.5e-118 428.3 409 59.7
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 2.7e-116 422.9 321 71.3
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 4.7e-116 422.2 427 58.1
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 3.0e-115 419.5 386 59.6
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 8.8e-115 417.9 405 57.3
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 3.7e-113 412.5 423 57.2
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 4.8e-113 412.1 428 55.6
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 1.8e-112 410.2 416 55.8
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 5.9e-111 405.2 413 55.2
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 1.9e-109 400.2 403 55.6
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 3.6e-108 396.0 329 64.1
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 6.1e-108 395.2 328 66.8
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 1.8e-107 393.7 327 64.2
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 1.5e-106 390.6 344 61.9
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 3.4e-106 389.4 403 54.3
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 4.4e-106 389.0 327 62.7
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 5.7e-106 388.7 330 62.1
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 4.1e-104 382.5 426 54.7
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 9.1e-104 381.3 398 57.0
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 5.9e-103 378.6 328 62.5
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 3.8e-102 375.9 321 61.4
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 3.8e-102 375.9 323 62.8
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 5.0e-102 375.6 329 62.6
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 1.1e-101 374.4 313 62.3
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 1.5e-101 374.0 327 61.5
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 2.1e-100 370.2 335 60.0
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 8.0e-100 368.2 399 55.9
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 4.4e-98 362.5 331 58.0
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 6.6e-94 348.6 420 48.8
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 2.1e-92 343.6 333 57.1
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 3.1e-91 339.7 329 57.1
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 5.2e-91 339.0 414 47.6
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 8.9e-91 338.2 334 55.4
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 7.8e-87 325.1 405 49.1
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 1.9e-85 320.5 424 45.0
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 7.1e-80 302.0 322 55.9
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 9.2e-80 301.6 316 53.2
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 1.6e-71 274.2 316 52.8
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 1.7e-62 244.2 206 65.0
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 1.6e-55 221.1 234 59.0
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 3.6e-52 209.9 289 42.9
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 1.4e-51 208.0 192 56.2
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.8e-51 207.6 268 48.9
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.9e-45 187.6 292 40.8
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 1.6e-36 157.9 334 36.2
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 4.1e-35 153.3 394 31.0
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 5.3e-35 152.9 82 95.1
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 1.7e-33 147.9 82 93.9
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 8.4e-33 145.6 82 89.0
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 1.9e-32 144.4 82 89.0
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 4.2e-32 143.3 82 86.6
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 4.2e-32 143.3 82 86.6
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 2.3e-30 137.5 82 82.9
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 6.7e-30 136.0 83 80.7
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 1.9e-29 134.4 89 76.4
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.9e-29 134.4 81 84.0
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 1.9e-29 134.4 82 82.9
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 9.7e-29 132.1 81 82.7
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 1.6e-28 131.3 75 86.7
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 7.7e-26 122.5 81 74.1
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 3.9e-22 110.2 98 64.3
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 8.8e-14 82.4 47 85.1
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 2.4e-11 74.3 87 47.1
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 2.0e-10 71.2 41 82.9
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 8.5e-09 65.9 76 47.4
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 3.2e-08 63.9 31 96.8


User provided reference genes

Program Settings