Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold153G36995 Striga asiatica HOM05D001546 ORTHO05D008648 1.2e-86 323.2 162 100.0
SGA_v2.0_scaffold95G28909 Striga asiatica HOM05D001546 ORTHO05D008648 4.5e-14 82.0 102 57.8
EL10Ac7g17656 Beta vulgaris HOM05D001546 ORTHO05D008648 1.5e-12 77.0 94 51.1
Migut.B01619 Erythranthe guttata HOM05D001546 ORTHO05D008648 1.5e-12 77.0 89 57.3
PGR042G0240 Punica granatum HOM05D001546 ORTHO05D008648 2.5e-12 76.3 95 53.7
Cpa.g.sc18.103 Carica papaya HOM05D001546 ORTHO05D008648 4.2e-12 75.5 89 52.8
Thhalv10001556m.g Eutrema salsugineum HOM05D001546 ORTHO05D008648 4.2e-12 75.5 91 54.9
ATR0757G033 Amborella trichopoda HOM05D001546 ORTHO05D008648 5.5e-12 75.1 91 49.5
AUR62013651 Chenopodium quinoa HOM05D001546 ORTHO05D002908 5.5e-12 75.1 93 52.7
PSO832G0911 Papaver somniferum HOM05D001546 ORTHO05D008648 7.2e-12 74.7 89 52.8
CAN.G295.12 Capsicum annuum HOM05D001546 ORTHO05D008648 9.5e-12 74.3 89 52.8
PSO782G0784 Papaver somniferum HOM05D001546 ORTHO05D008648 9.5e-12 74.3 89 51.7
SalBow5G5288 Salvia bowleyana HOM05D001546 ORTHO05D008648 9.5e-12 74.3 89 51.7
Sc23g0003690 Simmondsia chinensis HOM05D001546 ORTHO05D008648 9.5e-12 74.3 89 53.9
Solyc05g050960.4 Solanum lycopersicum HOM05D001546 ORTHO05D008648 9.5e-12 74.3 89 53.9
Sopen05g029430 Solanum pennellii HOM05D001546 ORTHO05D008648 9.5e-12 74.3 89 53.9
Aqoxy7G00663 Aquilegia oxysepala HOM05D001546 ORTHO05D008648 1.6e-11 73.6 89 52.8
BcaB02g08944 Brassica carinata HOM05D001546 ORTHO05D002908 1.6e-11 73.6 89 52.8
BcaC02g12229 Brassica carinata HOM05D001546 ORTHO05D008648 1.6e-11 73.6 89 52.8
A05p05300 Brassica napus HOM05D001546 ORTHO05D008648 1.6e-11 73.6 89 52.8
C04p06210 Brassica napus HOM05D001546 ORTHO05D008648 1.6e-11 73.6 89 52.8
BraA05t19499Z Brassica rapa HOM05D001546 ORTHO05D008648 1.6e-11 73.6 89 52.8
MELO3C006201.2 Cucumis melo HOM05D001546 ORTHO05D008648 1.6e-11 73.6 94 48.9
Thhalv10001529m.g Eutrema salsugineum HOM05D001546 ORTHO05D008648 1.6e-11 73.6 89 52.8
Peaxi162Scf00959g00125 Petunia axillaris HOM05D001546 ORTHO05D008648 1.6e-11 73.6 89 52.8
PGSC0003DMG400007020 Solanum tuberosum HOM05D001546 ORTHO05D008648 1.6e-11 73.6 89 52.8
CARHR140490 Cardamine hirsuta HOM05D001546 ORTHO05D008648 2.1e-11 73.2 89 52.8
Nn1g01135 Nelumbo nucifera HOM05D001546 ORTHO05D008648 2.7e-11 72.8 91 53.8
CSS0003206 Camellia sinensis var. sinensis HOM05D001546 ORTHO05D008648 3.6e-11 72.4 89 51.7
Sp4g27300 Schrenkiella parvula HOM05D001546 ORTHO05D008648 3.6e-11 72.4 89 51.7
SpUn0031_0020 Schrenkiella parvula HOM05D001546 ORTHO05D008648 3.6e-11 72.4 89 51.7
AL4G44380 Arabidopsis lyrata HOM05D001546 ORTHO05D008648 4.7e-11 72.0 89 51.7
EL10Ac1g00872 Beta vulgaris HOM05D001546 ORTHO05D008648 4.7e-11 72.0 91 52.7
CSS0048837 Camellia sinensis var. sinensis HOM05D001546 ORTHO05D008648 4.7e-11 72.0 89 50.6
Carub.0004s2788 Capsella rubella HOM05D001546 ORTHO05D008648 4.7e-11 72.0 89 51.7
Dinv43692 Davidia involucrata HOM05D001546 ORTHO05D008648 4.7e-11 72.0 89 51.7
Hund17030 Selenicereus undatus HOM05D001546 ORTHO05D008648 4.7e-11 72.0 89 49.4
Thecc.01G378800 Theobroma cacao HOM05D001546 ORTHO05D008648 4.7e-11 72.0 89 51.7
CANSAT56G2954 Cannabis sativa HOM05D001546 ORTHO05D008648 6.1e-11 71.6 89 48.3
CANSAT56G4308 Cannabis sativa HOM05D001546 ORTHO05D008648 6.1e-11 71.6 89 48.3
ECA236G2516 Erigeron canadensis HOM05D001546 ORTHO05D008648 6.1e-11 71.6 96 47.9
Nitab4.5_0003912g0060 Nicotiana tabacum HOM05D001546 ORTHO05D008648 6.1e-11 71.6 91 54.9
AT2G45280 Arabidopsis thaliana HOM05D001546 ORTHO05D008648 8.0e-11 71.2 89 50.6
MSTRG.20739 Avicennia marina HOM05D001546 ORTHO05D008648 1.0e-10 70.9 89 53.9
ClCG05G002360 Citrullus lanatus HOM05D001546 ORTHO05D008648 1.0e-10 70.9 89 49.4
Cc02_g24070 Coffea canephora HOM05D001546 ORTHO05D008648 1.0e-10 70.9 89 50.6
HanXRQChr16g0532481 Helianthus annuus HOM05D001546 ORTHO05D008648 1.0e-10 70.9 89 49.4
Hma1.2p1_0044F.1_g026120 Hydrangea macrophylla HOM05D001546 ORTHO05D008648 1.0e-10 70.9 89 49.4
Lj7A531T53 Lonicera japonica HOM05D001546 ORTHO05D008648 1.0e-10 70.9 89 50.6
MBI12_g20322_MAGBIO Magnolia biondii HOM05D001546 ORTHO05D008648 1.0e-10 70.9 89 49.4
TWI14G0061 Tripterygium wilfordii HOM05D001546 ORTHO05D008648 1.0e-10 70.9 89 49.4
Atru.chr5.288 Acer truncatum HOM05D001546 ORTHO05D008648 1.4e-10 70.5 89 50.6
Eucgr.I00435 Eucalyptus grandis HOM05D001546 ORTHO05D008648 1.4e-10 70.5 91 51.6
Manes.11G109100 Manihot esculenta HOM05D001546 ORTHO05D008648 1.4e-10 70.5 89 53.9
Rhsim07G0028900 Rhododendron simsii HOM05D001546 ORTHO05D008648 1.4e-10 70.5 89 50.6
GSVIVG01027665001 Vitis vinifera HOM05D001546 ORTHO05D008648 1.4e-10 70.5 88 54.5
DCAR_031520 Daucus carota HOM05D001546 ORTHO05D008648 1.8e-10 70.1 91 46.2
Glyma.03G027600 Glycine max HOM05D001546 ORTHO05D008648 2.3e-10 69.7 89 47.2
Lsat_1_v5_gn_7_9580 Lactuca sativa HOM05D001546 ORTHO05D008648 2.3e-10 69.7 89 49.4
Nitab4.5_0001329g0130 Nicotiana tabacum HOM05D001546 ORTHO05D008648 2.3e-10 69.7 91 53.8
THA.LOC104817238 Tarenaya hassleriana HOM05D001546 ORTHO05D008648 2.3e-10 69.7 89 50.6
unitig_0.g1301 Utricularia gibba HOM05D001546 ORTHO05D008648 2.3e-10 69.7 89 50.6
vmacro13415 Vaccinium macrocarpon HOM05D001546 ORTHO05D008648 2.3e-10 69.7 119 42.0
MD07G1119400 Malus domestica HOM05D001546 ORTHO05D008648 3.0e-10 69.3 89 49.4
Sed0028009 Sechium edule HOM05D001546 ORTHO05D008648 3.0e-10 69.3 89 47.2
Gohir.A08G135700 Gossypium hirsutum HOM05D001546 ORTHO05D008648 4.0e-10 68.9 89 48.3
Gorai.004G162800 Gossypium raimondii HOM05D001546 ORTHO05D008648 4.0e-10 68.9 89 48.3
Actinidia12247 Actinidia chinensis HOM05D001546 ORTHO05D008648 5.2e-10 68.6 89 49.4
Os01g0578000 Oryza sativa ssp. japonica HOM05D001546 ORTHO05D008648 5.2e-10 68.6 89 47.2
CiPaw.01G263600 Carya illinoinensis HOM05D001546 ORTHO05D008648 6.8e-10 68.2 91 51.6
QL08p052789 Quercus lobata HOM05D001546 ORTHO05D008648 6.8e-10 68.2 89 48.3
RcHm_v2.0_Chr1g0349941 Rosa chinensis HOM05D001546 ORTHO05D008648 6.8e-10 68.2 89 48.3
Prupe.2G143400 Prunus persica HOM05D001546 ORTHO05D008648 8.8e-10 67.8 92 47.8
CDE04G0759 Ceratophyllum demersum HOM05D001546 ORTHO05D008648 1.2e-09 67.4 91 53.8
FAN03G2056 Fragaria x ananassa HOM05D001546 ORTHO05D008648 1.2e-09 67.4 89 47.2
FAN10G0703 Fragaria x ananassa HOM05D001546 ORTHO05D002908 1.5e-09 67.0 108 41.7
Zm00001eb160270 Zea mays HOM05D001546 ORTHO05D008648 1.5e-09 67.0 89 46.1
arahy.Tifrunner.gnm1.ann1.KRWE0T Arachis hypogaea HOM05D001546 ORTHO05D008648 2.0e-09 66.6 91 48.4
arahy.Tifrunner.gnm1.ann1.Y484AZ Arachis hypogaea HOM05D001546 ORTHO05D008648 2.0e-09 66.6 91 48.4
Lj3g0018034 Lotus japonicus HOM05D001546 ORTHO05D008648 2.0e-09 66.6 91 49.5
FvH4_7g11500 Fragaria vesca HOM05D001546 ORTHO05D008648 2.6e-09 66.2 89 47.2
FAN06G1243 Fragaria x ananassa HOM05D001546 ORTHO05D002908 2.6e-09 66.2 89 47.2
FAN06G5055 Fragaria x ananassa HOM05D001546 ORTHO05D002908 2.6e-09 66.2 89 47.2
FAN10G0988 Fragaria x ananassa HOM05D001546 ORTHO05D002908 2.6e-09 66.2 89 47.2
Lalb_Chr07g0189931 Lupinus albus HOM05D001546 ORTHO05D008648 2.6e-09 66.2 89 49.4
Phvul.010G082100 Phaseolus vulgaris HOM05D001546 ORTHO05D008648 2.6e-09 66.2 89 46.1
TPR.G31325 Trifolium pratense HOM05D001546 ORTHO05D008648 2.6e-09 66.2 89 44.9
arahy.Tifrunner.gnm1.ann1.ZAG0TB Arachis hypogaea HOM05D001546 ORTHO05D008648 3.4e-09 65.9 91 48.4
Medtr4g024850 Medicago truncatula HOM05D001546 ORTHO05D008648 3.4e-09 65.9 89 44.9
VMungo0331G1707 Vigna mungo HOM05D001546 ORTHO05D008648 3.4e-09 65.9 91 44.0
Medtr4g111780 Medicago truncatula HOM05D001546 ORTHO05D008648 1.7e-08 63.5 89 43.8
Psat7g230880 Pisum sativum HOM05D001546 ORTHO05D008648 2.2e-08 63.2 89 42.7
Ciclev10021754m.g Citrus clementina HOM05D001546 ORTHO05D008648 3.7e-08 62.4 46 78.3
Aa31LG1G26810 Aethionema arabicum HOM05D001546 ORTHO05D008648 4.9e-08 62.0 89 47.2
Duzib138G0139 Durio zibethinus HOM05D001546 ORTHO05D002908 6.3e-08 61.6 44 72.7
arahy.Tifrunner.gnm1.ann1.6GCE7S Arachis hypogaea HOM05D001546 ORTHO05D008648 1.4e-07 60.5 47 66.0
Mapoly0114s0015 Marchantia polymorpha HOM05D001546 ORTHO05D008648 3.1e-07 59.3 91 39.6
AUR62004193 Chenopodium quinoa HOM05D001546 ORTHO05D008648 4.1e-07 58.9 44 68.2
Oeu005800.1 Olea europaea HOM05D001546 ORTHO05D008648 4.1e-07 58.9 44 72.7
Potri.014G068100 Populus trichocarpa HOM05D001546 ORTHO05D008648 4.1e-07 58.9 89 43.8
Ah.05g176670 Amaranthus hybridus HOM05D001546 ORTHO05D008648 5.4e-07 58.5 44 72.7
PRCOL_00003537 Prasinoderma coloniale HOM05D001546 ORTHO05D008648 5.4e-07 58.5 118 35.6
AagrBONN_evm.TU.Sc2ySwM_228.594 Anthoceros agrestis HOM05D001546 ORTHO05D008648 1.6e-06 57.0 93 37.6
CsaV3_3G009800 Cucumis sativus L. HOM05D001546 ORTHO05D008648 1.6e-06 57.0 44 68.2
SEGI_22011 Sequoiadendron giganteum HOM05D001546 ORTHO05D008648 1.6e-06 57.0 91 40.7
Ca_19947_v3 Cicer arietinum L. HOM05D001546 ORTHO05D008648 3.5e-06 55.8 45 64.4


User provided reference genes

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