Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 0.0e+00 1235.7 626 100.0
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.6e-240 836.3 633 71.2
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 9.3e-233 810.4 634 68.6
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 2.2e-226 789.3 625 67.0
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 9.3e-225 783.9 637 65.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 7.9e-224 780.8 594 67.7
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.8e-223 779.6 594 67.8
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.9e-223 778.5 592 68.1
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.2e-221 772.7 643 64.7
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.4e-219 765.4 601 66.4
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 7.7e-219 764.2 635 65.7
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 4.2e-217 758.4 621 64.3
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.2e-216 756.9 625 64.3
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.7e-216 755.7 591 66.0
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.4e-215 753.4 594 65.5
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 3.0e-215 752.3 594 65.5
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 3.0e-215 752.3 615 64.4
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.7e-213 746.5 642 62.6
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.2e-211 740.3 630 64.0
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.3e-210 736.9 627 62.2
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.8e-210 735.3 622 64.5
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 5.0e-210 734.9 643 64.1
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.2e-209 732.3 622 64.6
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 4.2e-209 731.9 622 64.1
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 8.8e-207 724.2 619 62.7
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.5e-206 723.4 636 60.5
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 4.4e-206 721.8 637 61.7
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 9.7e-206 720.7 634 61.4
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 9.7e-206 720.7 635 60.3
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.3e-205 720.3 645 60.2
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 3.7e-205 718.8 643 60.2
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 3.7e-205 718.8 641 59.4
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.1e-204 717.2 625 61.3
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.2e-203 713.8 632 60.8
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.0e-203 713.0 631 61.6
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 5.9e-203 711.4 629 61.4
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 7.2e-201 704.5 638 61.0
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.2e-200 703.7 634 60.6
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.1e-200 703.0 631 60.5
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 4.7e-200 701.8 632 59.0
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 6.1e-200 701.4 628 60.0
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 8.8e-199 697.6 632 61.7
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.3e-198 695.7 619 61.2
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.7e-198 694.9 619 61.2
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.5e-198 694.5 619 61.4
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 2.8e-197 692.6 622 59.8
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 3.7e-197 692.2 626 60.4
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 8.2e-197 691.0 619 61.2
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.1e-196 690.6 626 62.0
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-196 690.6 619 61.2
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 3.1e-196 689.1 620 60.0
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 4.1e-196 688.7 619 61.1
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 9.1e-196 687.6 643 58.3
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.2e-195 687.2 641 60.2
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.2e-195 687.2 637 58.2
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 4.5e-195 685.3 611 61.2
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 7.7e-195 684.5 628 60.5
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.3e-194 683.7 640 58.6
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 2.2e-194 682.9 622 59.8
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 6.5e-194 681.4 628 58.9
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 8.5e-194 681.0 640 57.8
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.1e-193 680.6 630 59.4
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 2.5e-193 679.5 645 59.2
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 2.5e-193 679.5 637 57.5
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 9.4e-193 677.6 634 60.6
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 9.4e-193 677.6 636 59.3
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 1.6e-192 676.8 641 59.0
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 2.7e-192 676.0 626 61.0
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 3.6e-192 675.6 644 58.5
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 2.3e-191 672.9 642 59.2
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 3.0e-191 672.5 622 60.5
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 8.8e-191 671.0 619 60.9
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 8.8e-191 671.0 620 60.8
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 4.4e-190 668.7 646 58.7
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 2.8e-189 666.0 631 57.8
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 3.7e-189 665.6 624 58.7
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 9.1e-188 661.0 623 57.8
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.2e-187 660.6 629 57.2
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 3.5e-187 659.1 621 57.6
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 5.9e-187 658.3 581 61.1
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.7e-186 656.8 612 58.0
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.6e-184 650.2 624 56.7
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 2.3e-183 646.4 622 56.9
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 8.8e-183 644.4 630 58.1
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.2e-182 644.0 615 57.4
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 1.2e-182 644.0 632 58.2
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 4.9e-181 638.6 621 57.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 3.8e-178 629.0 637 56.7
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 6.6e-178 628.2 630 56.3
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 8.6e-178 627.9 613 57.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 8.6e-178 627.9 613 57.4
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.8e-176 622.9 615 57.1
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 6.1e-176 621.7 628 57.2
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 4.0e-175 619.0 613 56.8
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.5e-174 617.1 545 60.9
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 7.5e-174 614.8 614 56.0
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 4.9e-173 612.1 614 55.7
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 4.9e-173 612.1 614 55.7
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 3.6e-168 595.9 614 54.7
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 4.7e-168 595.5 614 54.7
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 4.0e-167 592.4 620 55.3
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 6.8e-167 591.7 619 54.6
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 6.0e-163 578.6 634 53.8
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 3.9e-162 575.9 519 60.9
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 5.8e-158 562.0 620 52.3
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 7.5e-158 561.6 612 52.8
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.3e-157 560.8 536 58.8
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 5.4e-156 555.4 643 50.9
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 4.3e-153 545.8 558 54.8
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 3.6e-152 542.7 593 51.9
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.7e-149 533.9 666 46.4
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.0e-146 524.6 629 48.3
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 8.6e-146 521.5 520 54.8
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.4e-142 509.6 646 49.4
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 3.5e-139 499.6 434 63.8
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 5.1e-138 495.7 622 47.1
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.9e-137 493.8 614 48.7
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.2e-133 480.3 487 58.3
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 7.1e-124 448.7 508 50.6
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 1.1e-111 408.3 518 46.1
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 6.1e-107 392.5 650 39.8
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 7.9e-107 392.1 396 55.3
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.8e-103 380.9 337 62.6
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 2.0e-102 377.5 659 39.3
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 2.6e-97 360.5 537 42.8
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 2.0e-94 350.9 420 49.5
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 5.9e-86 322.8 442 46.4
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 7.7e-86 322.4 612 37.1
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.8e-82 311.2 259 65.3
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.2e-82 309.7 364 51.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.8e-82 308.9 381 50.9
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.3e-80 305.1 233 64.4
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 3.1e-71 273.9 243 60.1
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 7.0e-71 272.7 558 35.8
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 2.4e-63 247.7 769 29.9
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 2.3e-58 231.1 144 71.5
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 6.8e-58 229.6 202 58.4
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 2.9e-56 224.2 361 41.3
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 3.7e-56 223.8 365 40.3
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.0e-53 215.7 365 39.7
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.5e-44 185.3 515 31.1
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.9e-39 168.3 153 58.8
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.0e-37 162.5 550 29.5
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 2.3e-37 161.4 576 27.1
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 4.3e-36 157.1 174 48.9
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.6e-35 155.2 340 36.8
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 3.0e-29 134.4 252 40.9
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 2.4e-23 114.8 96 61.5
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 1.2e-22 112.5 82 67.1
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 3.1e-18 97.8 259 33.2
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 2.6e-17 94.7 83 61.4
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 1.9e-15 88.6 106 55.7
SGA_v2.0_scaffold48G17990 Striga asiatica HOM05D004635 ORTHO05D405620 7.1e-15 86.7 96 56.2
SGA_v2.0_scaffold48G18055 Striga asiatica HOM05D000936 ORTHO05D399589 1.3e-11 75.9 154 46.1
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 6.4e-08 63.5 45 68.9
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 8.4e-08 63.2 75 50.7
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 9.3e-07 59.7 40 70.0


User provided reference genes

Program Settings