Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold132G34498 Striga asiatica HOM05D000216 ORTHO05D000634 4.9e-196 687.6 337 100.0
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 7.2e-123 444.5 375 63.2
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 1.6e-122 443.4 379 63.6
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.4e-120 435.3 379 63.1
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 9.1e-118 427.6 403 57.8
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 2.0e-117 426.4 378 61.6
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 3.5e-117 425.6 379 59.4
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 7.7e-117 424.5 373 63.5
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 1.2e-112 410.6 383 58.2
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 7.0e-110 401.4 377 59.4
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 7.0e-110 401.4 377 59.4
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 7.0e-110 401.4 377 59.4
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 9.2e-110 401.0 379 58.3
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 1.3e-108 397.1 377 58.4
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 8.6e-108 394.4 373 57.6
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 2.0e-104 383.3 392 54.1
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-104 381.3 398 53.0
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-103 379.0 372 55.6
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-103 379.0 372 55.6
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-103 379.0 372 55.6
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-103 379.0 372 55.6
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-103 379.0 372 55.6
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-103 379.0 372 55.6
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-103 379.0 372 55.6
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-103 379.0 372 55.6
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-103 379.0 372 55.6
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-103 379.0 372 55.6
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 2.4e-102 376.3 383 56.1
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 7.0e-102 374.8 379 55.1
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 1.6e-101 373.6 381 55.1
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.0e-101 371.7 370 55.4
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.1e-99 367.5 406 52.0
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 2.1e-98 363.2 376 53.7
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 8.9e-97 357.8 380 53.2
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 2.0e-96 356.7 380 53.2
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 3.4e-96 355.9 380 52.9
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 3.4e-96 355.9 380 52.9
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 7.1e-94 348.2 338 59.2
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.9e-91 340.1 369 52.6
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 3.7e-87 325.9 360 52.2
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.3e-76 290.0 333 52.3
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.3e-76 290.0 333 52.3
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.3e-76 290.0 333 52.3
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.3e-76 290.0 333 52.3
MSTRG.17791 Avicennia marina HOM05D000216 ORTHO05D000634 1.5e-75 287.3 274 58.4
Gorai.004G210400 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.4e-73 280.0 281 55.5
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.9e-73 278.5 385 44.4
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 4.9e-71 272.3 399 43.1
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 6.4e-71 271.9 373 45.3
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 1.4e-70 270.8 373 45.0
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 1.4e-70 270.8 373 45.0
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 1.4e-70 270.8 373 45.0
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 3.2e-70 269.6 306 50.0
Gohir.D08G199601 Gossypium hirsutum HOM05D000216 ORTHO05D000634 5.4e-70 268.9 268 56.7
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 2.7e-69 266.5 170 75.9
Gorai.013G018800 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.3e-68 264.2 284 52.8
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 6.6e-68 261.9 172 76.2
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 8.7e-68 261.5 346 45.1
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 1.5e-67 260.8 399 42.9
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 1.9e-67 260.4 174 74.7
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.9e-67 260.4 377 46.2
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 4.3e-67 259.2 171 76.6
Gohir.A07G183950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.4e-67 258.5 225 61.8
Gohir.D13G016950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.4e-67 258.5 258 56.2
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 1.3e-66 257.7 241 57.3
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 1.8e-65 253.8 352 43.5
CAN.G939.13 Capsicum annuum HOM05D000216 ORTHO05D000634 6.7e-60 235.3 139 82.0
CAN.G511.9 Capsicum annuum HOM05D000216 ORTHO05D000634 1.9e-59 233.8 139 82.0
HanXRQChr14g0436641 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-59 233.4 289 49.5
Atru.chr6.1615 Acer truncatum HOM05D000216 ORTHO05D000634 7.4e-59 231.9 142 81.0
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 8.1e-58 228.4 139 81.3
Migut.K00966 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.4e-57 227.6 166 72.3
Lj1g0027665 Lotus japonicus HOM05D000216 ORTHO05D000634 7.1e-54 215.3 143 74.1
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 6.0e-53 212.2 138 74.6
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.1e-52 209.1 312 40.7
Solyc08g028910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.3e-51 206.5 160 66.9
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 2.1e-50 203.8 228 50.0
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 2.8e-50 203.4 307 43.6
Hund04025 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.2e-50 201.8 138 69.6
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 1.4e-49 201.1 145 70.3
Hund18043 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.2e-46 189.5 253 45.8
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.4e-41 174.5 116 72.4
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 5.3e-41 172.6 146 62.3
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.5e-40 169.5 111 73.9
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 1.0e-39 168.3 92 88.0
HanXRQChr00c0988g0578131 Helianthus annuus HOM05D000216 ORTHO05D000634 1.7e-39 167.5 105 79.0
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 1.2e-37 161.4 88 92.0
Hund31462 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.9e-37 158.7 166 53.0
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.0e-36 158.3 307 35.8
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.0e-36 158.3 307 35.8
Glyma.02G221400 Glycine max HOM05D000216 ORTHO05D000634 1.4e-36 157.9 106 73.6
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 3.0e-36 156.8 302 36.1
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 3.9e-36 156.4 225 45.8
Lalb_Chr06g0173101 Lupinus albus HOM05D000216 ORTHO05D000634 1.3e-34 151.4 108 72.2
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 5.3e-33 146.0 108 68.5
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 3.4e-32 143.3 85 83.5
Gohir.D03G089666 Gossypium hirsutum HOM05D000216 ORTHO05D000634 5.9e-32 142.5 91 76.9
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 5.9e-32 142.5 300 35.3
BraSC140t45608Z Brassica rapa HOM05D000216 ORTHO05D000634 1.0e-31 141.7 171 48.5
Gorai.003G071700 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.1e-30 138.3 91 74.7
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 1.4e-30 137.9 76 90.8
TPR.G26480 Trifolium pratense HOM05D000216 ORTHO05D000634 1.4e-30 137.9 87 74.7
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.6e-29 134.4 75 88.0
arahy.Tifrunner.gnm1.ann1.8W122S Arachis hypogaea HOM05D000216 ORTHO05D000634 1.4e-28 131.3 301 34.6
Migut.D01341 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.3e-28 130.6 122 60.7
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 2.3e-28 130.6 76 84.2
Lsat_1_v5_gn_3_118000 Lactuca sativa HOM05D000216 ORTHO05D000634 3.0e-28 130.2 73 86.3
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 3.9e-28 129.8 72 88.9
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 5.1e-28 129.4 72 86.1
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 8.8e-28 128.6 72 86.1
HanXRQChr00c0313g0573471 Helianthus annuus HOM05D000216 ORTHO05D000634 2.0e-27 127.5 147 53.7
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 2.6e-27 127.1 84 76.2
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 3.3e-27 126.7 75 77.3
Oeu010681.1 Olea europaea HOM05D000216 ORTHO05D000634 4.4e-27 126.3 84 73.8
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 4.4e-27 126.3 75 78.7
HanXRQChr07g0188321 Helianthus annuus HOM05D000216 ORTHO05D000634 5.7e-27 125.9 68 88.2
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 9.7e-27 125.2 72 81.9
EL10Ac3g05558 Beta vulgaris HOM05D000216 ORTHO05D000634 1.7e-26 124.4 68 85.3
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 2.8e-26 123.6 70 82.9
Migut.G01245 Erythranthe guttata HOM05D000216 ORTHO05D000634 8.2e-26 122.1 84 70.2
Gorai.002G075300 Gossypium raimondii HOM05D000216 ORTHO05D000634 8.2e-26 122.1 71 78.9
Lalb_Chr13g0292901 Lupinus albus HOM05D000216 ORTHO05D000634 8.2e-26 122.1 75 78.7
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 4.5e-24 116.3 69 79.7
HanXRQChr00c0823g0577631 Helianthus annuus HOM05D000216 ORTHO05D000634 1.0e-23 115.2 62 87.1
GSVIVG01030958001 Vitis vinifera HOM05D000216 ORTHO05D000634 4.2e-22 109.8 66 74.2
ClCG07G007330 Citrullus lanatus HOM05D000216 ORTHO05D000634 9.4e-22 108.6 81 61.7
HanXRQChr14g0455001 Helianthus annuus HOM05D000216 ORTHO05D000634 9.4e-22 108.6 138 48.6
MELO3C000330.2 Cucumis melo HOM05D000216 ORTHO05D000634 2.1e-21 107.5 65 75.4
Lalb_Chr23g0274571 Lupinus albus HOM05D000216 ORTHO05D000634 8.0e-21 105.5 71 71.8
Zm00001eb434960 Zea mays HOM05D000216 ORTHO05D000634 8.0e-21 105.5 162 40.1
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 5.2e-20 102.8 56 85.7
BolSC29t60451H Brassica oleracea HOM05D000216 ORTHO05D000634 1.5e-19 101.3 66 68.2
Hund07969 Selenicereus undatus HOM05D000216 ORTHO05D000634 9.7e-19 98.6 69 69.6
Solyc05g020010.1 Solanum lycopersicum HOM05D000388 ORTHO05D000473 1.3e-18 98.2 64 76.6
Solyc01g056330.2 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.8e-18 96.3 73 63.0
Lalb_Chr06g0173011 Lupinus albus HOM05D000216 ORTHO05D000634 1.4e-17 94.7 66 68.2
Medtr3g450720 Medicago truncatula HOM05D000216 ORTHO05D000634 7.0e-17 92.4 59 72.9
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 1.6e-16 91.3 63 74.6
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 4.5e-16 89.7 85 63.5
BraSC143t45681Z Brassica rapa HOM05D000216 ORTHO05D000634 5.9e-16 89.4 52 73.1
arahy.Tifrunner.gnm1.ann1.EI2YTD Arachis hypogaea HOM05D000890 ORTHO05D000697 1.3e-15 88.2 55 74.5
Hund04024 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.2e-15 87.4 127 41.7
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 8.5e-15 85.5 46 84.8
Potri.019G027720 Populus trichocarpa HOM05D000216 ORTHO05D000634 3.2e-14 83.6 73 60.3
CARHR056720 Cardamine hirsuta HOM05D000216 ORTHO05D000634 2.7e-13 80.5 45 84.4
Zm00001eb271610 Zea mays HOM05D000216 ORTHO05D000634 2.0e-11 74.3 146 34.2
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 4.4e-11 73.2 111 39.6
Zm00001eb226410 Zea mays HOM05D000216 ORTHO05D000634 5.7e-11 72.8 69 52.2
Nitab4.5_0004184g0070 Nicotiana tabacum HOM05D000216 ORTHO05D000634 7.5e-11 72.4 46 78.3
Zm00001eb435750 Zea mays HOM05D000216 ORTHO05D000634 4.8e-10 69.7 65 53.8
Zm00001eb437130 Zea mays HOM05D000216 ORTHO05D000634 4.8e-10 69.7 65 53.8
Zm00001eb437780 Zea mays HOM05D000216 ORTHO05D000634 4.8e-10 69.7 65 53.8
Zm00001eb438310 Zea mays HOM05D000216 ORTHO05D000634 4.8e-10 69.7 65 53.8
Lalb_Chr06g0173001 Lupinus albus HOM05D000216 ORTHO05D000634 1.8e-09 67.8 51 64.7
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 3.1e-09 67.0 36 88.9
Aa31csc39G140 Aethionema arabicum HOM05D000216 ORTHO05D000634 1.6e-08 64.7 120 37.5
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 1.6e-08 64.7 34 85.3
Nn3g18112 Nelumbo nucifera HOM05D000216 ORTHO05D000634 2.7e-08 63.9 42 69.0
CAN.G213.14 Capsicum annuum HOM05D000216 ORTHO05D000634 4.5e-08 63.2 32 96.9
AUR62041877 Chenopodium quinoa HOM05D000216 ORTHO05D000634 4.5e-08 63.2 33 90.9
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.3e-07 61.6 36 80.6
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.3e-07 61.6 34 88.2
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 1.7e-07 61.2 39 76.9
TPR.G2741 Trifolium pratense HOM05D000216 ORTHO05D000634 5.0e-07 59.7 83 45.8
ClCG01G011270 Citrullus lanatus HOM05D000216 ORTHO05D000634 2.5e-06 57.4 48 58.3


User provided reference genes

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