Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 4.6e-250 867.5 448 100.0
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 1.2e-133 480.7 440 59.1
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 1.6e-133 480.3 446 59.0
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 4.6e-133 478.8 447 58.6
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 2.6e-128 463.0 448 58.5
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 8.4e-127 458.0 410 58.5
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 1.4e-126 457.2 433 57.3
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 6.0e-125 451.8 439 56.0
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 1.8e-124 450.3 440 56.6
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 3.0e-124 449.5 424 56.6
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 3.9e-124 449.1 444 55.6
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 3.3e-123 446.0 440 56.1
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 9.6e-123 444.5 410 57.1
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 2.1e-122 443.4 447 55.9
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 3.7e-122 442.6 419 55.8
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 6.2e-122 441.8 447 55.7
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 8.1e-122 441.4 419 56.3
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 8.1e-122 441.4 433 55.9
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 2.4e-121 439.9 439 55.8
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 2.4e-121 439.9 428 57.2
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 3.1e-121 439.5 406 58.1
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 3.1e-121 439.5 437 55.1
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 3.1e-121 439.5 440 55.0
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 5.3e-121 438.7 405 58.3
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 1.5e-120 437.2 410 57.3
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.5e-120 437.2 445 55.1
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 1.5e-120 437.2 423 55.6
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 4.5e-120 435.6 441 55.6
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 9.9e-120 434.5 419 57.0
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 1.3e-119 434.1 425 55.8
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.7e-119 433.7 448 53.8
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 2.2e-119 433.3 437 55.4
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 2.9e-119 433.0 437 54.5
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 2.9e-119 433.0 442 53.4
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 3.8e-119 432.6 452 54.2
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 4.9e-119 432.2 448 53.6
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 8.4e-119 431.4 437 54.7
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.9e-118 430.3 416 55.3
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 4.2e-118 429.1 422 55.9
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 5.5e-118 428.7 442 54.1
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 7.1e-118 428.3 430 55.3
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 7.1e-118 428.3 440 55.7
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 2.7e-117 426.4 440 54.5
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 4.6e-117 425.6 408 56.9
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 6.0e-117 425.2 448 54.7
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 2.3e-116 423.3 448 53.8
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 6.7e-116 421.8 391 57.3
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 4.3e-115 419.1 445 53.7
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 4.8e-114 415.6 417 54.4
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 1.1e-113 414.5 399 56.6
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 2.4e-113 413.3 394 57.1
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 6.9e-113 411.8 432 53.7
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 9.0e-113 411.4 407 56.0
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 1.5e-112 410.6 436 52.8
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 4.5e-112 409.1 413 55.2
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 1.7e-111 407.1 430 53.3
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 3.8e-111 406.0 391 56.8
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 4.6e-109 399.1 380 56.8
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 7.9e-109 398.3 437 51.9
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 1.3e-108 397.5 368 57.1
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 6.7e-108 395.2 409 53.5
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 6.7e-108 395.2 496 47.4
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 1.1e-107 394.4 537 45.4
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 3.3e-107 392.9 410 53.4
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 3.3e-107 392.9 557 44.3
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 9.7e-107 391.3 429 51.7
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 9.7e-107 391.3 405 53.6
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 9.7e-107 391.3 412 52.9
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 1.3e-106 391.0 438 52.3
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 2.2e-106 390.2 446 51.8
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 1.1e-105 387.9 523 47.2
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 2.6e-104 383.3 436 50.7
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 3.9e-100 369.4 441 48.8
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 8.2e-98 361.7 446 48.7
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 4.1e-97 359.4 461 46.9
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 6.9e-97 358.6 440 49.5
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 8.5e-95 351.7 449 47.7
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 1.1e-94 351.3 391 50.1
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.9e-94 350.5 437 48.5
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 2.5e-94 350.1 466 47.0
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 3.2e-94 349.7 444 48.9
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 4.2e-94 349.4 333 58.6
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 5.5e-94 349.0 430 48.8
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 1.4e-92 344.4 411 50.1
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 5.1e-92 342.4 439 47.4
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 3.1e-89 333.2 364 52.5
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 1.5e-86 324.3 403 47.1
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 1.2e-85 321.2 356 51.4
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 8.0e-85 318.5 328 54.0
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 5.2e-84 315.8 433 46.2
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 5.2e-84 315.8 361 49.6
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 7.4e-83 312.0 330 53.0
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 1.7e-82 310.8 439 45.1
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 1.4e-81 307.8 361 48.5
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 2.4e-81 307.0 356 50.0
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 2.4e-81 307.0 361 49.3
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 4.1e-81 306.2 357 49.9
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 9.1e-81 305.1 378 48.7
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 2.0e-80 303.9 381 48.6
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 2.9e-79 300.1 311 52.4
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 6.5e-79 298.9 362 48.3
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 7.2e-78 295.4 324 52.2
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 2.1e-77 293.9 326 51.2
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 3.6e-77 293.1 309 53.4
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 8.8e-76 288.5 325 50.2
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 8.3e-74 282.0 325 49.8
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 2.4e-73 280.4 410 43.2
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 5.3e-73 279.3 332 49.1
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 6.8e-60 235.7 232 57.3
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 5.7e-59 232.6 332 46.1
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.2e-53 214.9 288 46.2
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 5.2e-52 209.5 343 36.7
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 4.7e-45 186.4 226 49.6
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 2.3e-44 184.1 220 46.8
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 2.3e-39 167.5 141 61.0
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 6.6e-31 139.4 312 34.3
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 2.4e-28 131.0 79 79.7
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 2.4e-28 131.0 85 75.3
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 5.2e-28 129.8 79 79.7
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 2.6e-27 127.5 79 78.5
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 2.6e-27 127.5 79 78.5
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 4.4e-27 126.7 79 77.2
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 4.4e-27 126.7 72 84.7
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 9.9e-27 125.6 79 77.2
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 2.2e-26 124.4 79 73.4
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 3.8e-26 123.6 79 78.5
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 3.8e-26 123.6 79 74.7
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 2.4e-25 120.9 79 75.9
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 4.2e-25 120.2 79 73.4
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 4.2e-25 120.2 79 73.4
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 6.6e-15 86.3 108 47.2
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 3.6e-13 80.5 321 26.8
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 2.0e-11 74.7 103 46.6
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.7e-10 71.6 52 63.5
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 9.3e-09 65.9 71 52.1
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 1.8e-07 61.6 44 65.9
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 1.9e-06 58.2 30 86.7


User provided reference genes

Program Settings