Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 4.4e-99 364.8 204 100.0
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 1.2e-75 287.0 204 80.4
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 3.2e-73 278.9 205 79.5
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.0e-71 273.9 201 80.6
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.0e-71 273.9 204 78.9
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 3.9e-71 271.9 204 77.0
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 6.6e-71 271.2 205 77.6
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 6.6e-71 271.2 204 77.0
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 8.7e-71 270.8 205 77.6
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.1e-70 270.4 205 79.5
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.5e-70 270.0 204 79.4
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.5e-70 270.0 204 79.4
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 1.5e-70 270.0 205 78.5
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.9e-70 269.6 204 79.4
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 5.6e-70 268.1 206 78.2
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 2.1e-69 266.2 206 77.2
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.8e-69 265.8 205 75.1
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.8e-69 265.8 206 78.2
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 4.8e-69 265.0 204 76.5
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 8.1e-69 264.2 196 77.6
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 2.4e-68 262.7 205 77.1
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 2.4e-68 262.7 204 77.0
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 4.0e-68 261.9 202 77.7
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 6.9e-68 261.2 200 78.5
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 1.2e-67 260.4 202 78.2
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.5e-67 260.0 195 79.5
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 2.6e-67 259.2 205 75.1
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 3.4e-67 258.8 206 76.7
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 3.4e-67 258.8 198 77.8
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 4.4e-67 258.5 205 75.6
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 4.4e-67 258.5 205 75.6
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 7.6e-67 257.7 198 78.8
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 7.6e-67 257.7 206 72.3
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 7.6e-67 257.7 201 77.6
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.7e-66 256.5 201 77.6
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.9e-66 255.8 205 75.1
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.9e-66 255.8 205 76.1
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 3.8e-66 255.4 205 77.1
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.1e-65 253.8 205 75.1
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 1.4e-65 253.4 205 77.1
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 2.4e-65 252.7 201 77.6
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 2.4e-65 252.7 248 64.9
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 3.2e-65 252.3 205 74.1
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 4.2e-65 251.9 204 75.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 4.2e-65 251.9 204 75.0
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.4e-65 251.5 207 75.8
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 5.4e-65 251.5 204 76.5
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.1e-65 251.1 207 75.8
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 9.3e-65 250.8 204 74.5
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.2e-64 250.4 205 74.6
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.2e-64 250.4 205 74.6
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.6e-64 250.0 207 75.4
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 2.1e-64 249.6 204 74.0
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 2.1e-64 249.6 201 75.6
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 3.5e-64 248.8 204 75.5
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.0e-63 247.3 199 73.9
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 1.0e-63 247.3 206 75.2
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.0e-63 247.3 198 74.7
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 1.3e-63 246.9 205 74.1
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 1.3e-63 246.9 194 73.7
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.3e-63 246.9 201 74.6
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.7e-63 246.5 201 75.1
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.0e-63 245.7 196 77.0
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.0e-63 245.7 196 77.0
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 3.0e-63 245.7 196 77.0
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 3.0e-63 245.7 200 74.5
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 3.0e-63 245.7 200 74.5
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 3.9e-63 245.4 199 72.4
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 5.1e-63 245.0 204 73.0
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 6.6e-63 244.6 205 74.1
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 6.6e-63 244.6 205 74.1
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 6.6e-63 244.6 204 75.0
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 8.7e-63 244.2 199 74.9
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 1.5e-62 243.4 199 72.9
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.5e-62 243.4 201 75.6
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.9e-62 243.0 202 72.3
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 7.4e-62 241.1 203 71.9
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 9.6e-62 240.7 195 75.4
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 9.6e-62 240.7 201 74.6
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 9.6e-62 240.7 200 75.0
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.3e-61 240.4 201 73.6
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.6e-61 240.0 197 72.6
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 1.6e-61 240.0 204 73.0
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.8e-61 239.2 205 71.2
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 6.2e-61 238.0 205 72.7
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 8.1e-61 237.7 199 72.4
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.1e-60 237.3 199 71.4
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.4e-60 236.9 207 71.5
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.8e-60 236.5 199 69.8
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 2.4e-60 236.1 204 71.1
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 3.1e-60 235.7 199 69.8
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 5.3e-60 235.0 196 73.5
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 6.9e-60 234.6 199 69.8
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.5e-59 233.4 149 81.9
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 2.0e-59 233.0 199 69.8
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 5.8e-59 231.5 199 68.8
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.7e-58 229.9 204 70.1
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 2.2e-58 229.6 199 70.9
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 6.4e-58 228.0 209 69.4
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 8.4e-58 227.6 171 78.9
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.4e-57 226.1 148 75.0
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 5.5e-57 224.9 152 77.6
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 5.5e-57 224.9 199 70.4
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 9.3e-57 224.2 196 71.9
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.6e-56 223.4 169 80.5
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 8.7e-55 217.6 144 73.6
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.6e-54 214.9 130 80.8
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 7.4e-54 214.5 215 58.1
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 2.8e-53 212.6 207 63.3
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 8.1e-53 211.1 276 52.9
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 4.5e-51 205.3 199 67.3
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.9e-50 202.6 295 50.2
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 3.8e-50 202.2 207 58.9
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.5e-48 195.7 203 59.1
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.9e-47 192.2 197 66.0
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 6.7e-47 191.4 204 61.8
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 5.7e-46 188.3 109 86.2
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.8e-44 183.3 150 74.7
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 1.8e-39 166.8 224 55.8
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.0e-39 166.0 147 67.3
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 3.1e-36 156.0 128 64.1
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 7.7e-35 151.4 124 78.2
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.8e-34 149.1 125 68.0
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 6.5e-34 148.3 203 47.3
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.1e-33 147.5 212 54.2
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.2e-32 144.1 217 45.6
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.3e-29 134.0 229 45.0
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 4.1e-28 129.0 285 42.8
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 7.9e-24 114.8 210 43.8
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 8.2e-21 104.8 154 44.8
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 1.6e-19 100.5 211 38.4
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 1.6e-19 100.5 96 70.8
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 3.8e-18 95.9 91 72.5
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 4.5e-11 72.4 46 82.6
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.5e-09 67.4 164 29.3


User provided reference genes

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