Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33580 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 2.5e-164 582.0 292 100.0
SEGI_22431 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 1.7e-120 436.4 221 99.5
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 9.8e-68 261.2 245 56.3
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 3.2e-66 256.1 245 55.1
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 7.0e-66 255.0 245 56.3
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 7.0e-66 255.0 245 54.3
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 9.2e-66 254.6 249 53.4
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.0e-65 253.4 245 54.3
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.7e-65 253.1 248 53.2
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 1.7e-64 250.4 245 55.1
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 2.3e-64 250.0 249 53.0
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 3.9e-64 249.2 256 50.4
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 1.1e-63 247.7 244 55.7
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 1.9e-63 246.9 245 54.7
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 3.3e-63 246.1 245 53.5
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 5.6e-63 245.4 245 53.1
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 7.3e-63 245.0 245 54.3
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 1.2e-62 244.2 254 52.4
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.1e-62 243.4 247 52.6
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 2.8e-62 243.0 245 51.8
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 3.6e-62 242.7 245 53.1
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 6.2e-62 241.9 248 50.4
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 6.2e-62 241.9 244 52.9
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 8.1e-62 241.5 245 52.7
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 8.1e-62 241.5 245 52.2
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 8.1e-62 241.5 245 54.7
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.1e-61 241.1 244 52.0
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 1.1e-61 241.1 245 52.2
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 1.1e-61 241.1 245 54.3
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 2.3e-61 240.0 248 52.0
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 2.3e-61 240.0 245 51.8
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 5.2e-61 238.8 244 52.9
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 5.2e-61 238.8 245 51.4
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 8.9e-61 238.0 243 52.7
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 8.9e-61 238.0 244 52.9
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 2.0e-60 236.9 281 45.9
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 2.0e-60 236.9 243 53.5
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 2.6e-60 236.5 245 51.0
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 3.4e-60 236.1 243 51.0
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 3.4e-60 236.1 244 52.0
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 5.8e-60 235.3 245 51.0
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 9.8e-60 234.6 245 51.0
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 1.7e-59 233.8 243 50.2
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 1.7e-59 233.8 253 50.2
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 2.2e-59 233.4 243 49.8
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 2.2e-59 233.4 245 48.2
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 2.2e-59 233.4 245 50.6
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 3.7e-59 232.6 245 51.8
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 3.7e-59 232.6 243 50.2
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 3.7e-59 232.6 243 49.4
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 3.7e-59 232.6 243 49.4
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 3.7e-59 232.6 245 51.8
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 6.4e-59 231.9 243 49.8
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 6.4e-59 231.9 243 49.0
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 6.4e-59 231.9 230 53.0
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 8.3e-59 231.5 243 50.2
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 1.1e-58 231.1 245 49.8
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 1.1e-58 231.1 243 49.8
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 1.1e-58 231.1 243 49.4
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 1.1e-58 231.1 243 49.8
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.4e-58 230.7 246 49.2
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.4e-58 230.7 251 49.0
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 1.4e-58 230.7 251 49.0
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.4e-58 229.9 248 52.0
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 2.4e-58 229.9 253 49.0
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 2.4e-58 229.9 245 48.6
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 3.2e-58 229.6 246 50.8
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 3.2e-58 229.6 243 49.4
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 3.2e-58 229.6 243 49.4
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 3.2e-58 229.6 243 49.4
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 3.2e-58 229.6 245 50.2
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 4.1e-58 229.2 245 50.2
Sabra16G0064500 Salix brachista HOM05D003161 ORTHO05D005173 5.4e-58 228.8 241 49.8
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 7.1e-58 228.4 245 50.2
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 7.1e-58 228.4 245 47.3
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 9.2e-58 228.0 281 45.9
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 9.2e-58 228.0 253 47.8
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 1.2e-57 227.6 243 48.6
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 2.1e-57 226.9 243 49.0
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 2.7e-57 226.5 253 47.0
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 3.5e-57 226.1 257 47.5
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 3.5e-57 226.1 243 49.8
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 3.5e-57 226.1 246 48.8
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 7.8e-57 224.9 253 47.4
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 7.8e-57 224.9 245 51.0
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 1.0e-56 224.6 243 48.6
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 1.3e-56 224.2 245 46.9
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 3.0e-56 223.0 256 47.7
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 5.1e-56 222.2 243 46.9
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 6.6e-56 221.9 245 49.4
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 4.3e-55 219.2 248 47.6
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 1.2e-54 217.6 243 46.5
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 1.6e-54 217.2 257 48.2
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 1.6e-54 217.2 245 48.6
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 2.1e-54 216.9 248 48.0
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 8.1e-54 214.9 245 48.2
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 6.8e-53 211.8 241 49.0
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 5.8e-52 208.8 248 49.6
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 1.3e-51 207.6 261 43.7
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 9.2e-50 201.4 191 54.5
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 7.8e-49 198.4 188 54.8
Os07g0203275 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 5.1e-48 195.7 187 54.5
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 3.6e-46 189.5 187 53.5
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 8.9e-45 184.9 188 51.1
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 2.3e-40 170.2 211 45.0
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 8.7e-40 168.3 190 46.3
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 1.5e-39 167.5 211 45.0
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 1.9e-39 167.2 245 42.4
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 4.8e-38 162.5 246 43.1
Psat2g048720 Pisum sativum HOM05D003161 ORTHO05D002506 4.9e-35 152.5 152 47.4
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 3.2e-34 149.8 263 41.1
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 7.1e-34 148.7 153 51.6
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 1.2e-33 147.9 150 50.0
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 3.7e-30 136.3 252 35.3
MD14G1050200 Malus domestica HOM05D003161 ORTHO05D005173 4.0e-29 132.9 175 42.3
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 1.3e-16 91.3 284 27.5
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 3.0e-16 90.1 45 95.6
SEGI_28328 Sequoiadendron giganteum HOM05D003161 ORTHO05D387276 3.7e-14 83.2 45 88.9
Hund18982 Selenicereus undatus HOM05D003161 ORTHO05D005173 3.8e-11 73.2 149 32.9
Lsat_1_v5_gn_6_82341 Lactuca sativa HOM05D003208 ORTHO05D013695 5.5e-10 69.3 54 59.3
Lsat_1_v5_gn_8_160881 Lactuca sativa HOM05D003161 ORTHO05D005173 7.2e-10 68.9 54 57.4
Gohir.D05G345851 Gossypium hirsutum HOM05D003161 ORTHO05D010708 2.7e-09 67.0 64 54.7
Lsat_1_v5_gn_3_12560 Lactuca sativa HOM05D004807 ORTHO05D005915 4.3e-07 59.7 92 42.4


User provided reference genes

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