Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 2674.4 1318 100.0
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1469.5 1281 58.2
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1465.7 1299 56.6
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1465.3 1298 56.9
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1463.4 1291 57.0
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1462.2 1272 57.6
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1454.9 1268 57.8
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1453.3 1293 56.4
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1448.3 1269 57.6
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1448.3 1293 56.8
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1448.0 1270 57.2
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1439.5 1278 56.9
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1438.3 1271 57.0
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1437.9 1278 56.8
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1434.1 1278 56.9
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1433.3 1265 56.7
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1430.6 1294 55.7
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1429.5 1302 55.6
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1426.0 1269 56.1
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1425.2 1295 55.7
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1422.1 1270 56.7
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1421.8 1269 55.9
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1421.0 1265 56.1
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1420.2 1269 55.8
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1419.1 1272 56.1
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1418.7 1268 55.9
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1417.9 1295 55.4
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1413.3 1290 55.4
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1412.1 1253 57.2
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1407.5 1291 55.8
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1406.0 1320 54.4
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1405.6 1271 56.2
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1405.2 1269 55.4
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1404.0 1269 55.9
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1403.3 1305 54.5
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1402.5 1272 55.7
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1402.1 1271 55.9
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1394.8 1270 56.1
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1394.0 1290 55.3
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1384.8 1298 55.3
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1384.4 1268 55.0
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1382.1 1283 55.3
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1361.3 1273 54.4
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1360.9 1292 54.2
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1359.0 1267 53.9
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1358.6 1269 54.5
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1356.7 1292 54.0
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1356.3 1269 54.1
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1354.0 1264 54.6
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1353.6 1290 53.0
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1353.6 1273 53.8
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1352.8 1271 54.1
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1350.5 1269 53.7
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1349.3 1288 53.6
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1349.0 1285 53.5
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1342.0 1291 53.1
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1342.0 1270 54.4
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1341.3 1273 53.4
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1338.6 1347 51.6
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1338.6 1275 54.5
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1337.8 1272 53.6
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1335.1 1285 53.0
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1334.7 1287 53.5
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1334.7 1329 54.6
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1333.9 1302 53.4
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1333.2 1277 53.5
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1332.4 1291 52.6
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1331.2 1286 55.2
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1330.9 1274 53.1
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1328.5 1392 50.5
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1327.0 1278 53.2
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1326.6 1278 53.2
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1325.8 1275 53.3
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1325.5 1278 53.4
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1323.1 1267 52.8
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1321.2 1284 53.0
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1318.5 1275 52.7
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1318.1 1269 52.5
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1313.9 1283 52.8
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1313.1 1280 52.5
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1310.8 1197 56.4
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1305.0 1286 52.4
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1303.5 1268 52.2
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1296.2 1291 52.6
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1292.7 1355 52.8
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1287.3 1269 52.6
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1285.0 1372 49.8
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1281.2 1225 53.8
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1279.2 1203 54.9
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1271.9 1182 54.7
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1271.1 1273 52.9
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1246.5 1338 50.9
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1239.2 1044 59.4
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1231.9 1267 50.6
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1219.9 1272 50.3
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 0.0e+00 1213.7 1173 55.6
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1175.2 1033 56.7
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1172.1 1065 56.1
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1129.8 1048 54.9
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 2.1e-306 1056.2 1229 46.9
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 2.1e-306 1056.2 1177 47.2
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 6.0e-306 1054.7 1267 45.8
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 3.2e-283 979.2 1267 44.4
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 6.0e-274 948.3 813 59.9
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 8.7e-273 944.5 1464 41.3
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.4e-270 937.2 971 50.5
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.8e-265 920.2 877 52.9
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 4.2e-259 899.0 833 54.6
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 2.7e-258 896.3 851 53.2
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 2.3e-249 866.7 852 51.5
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.0e-248 863.6 972 49.1
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 5.0e-244 849.0 748 57.2
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.6e-234 816.2 972 47.4
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 4.1e-230 802.7 751 55.5
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 2.1e-226 790.4 777 51.1
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.1e-222 776.2 713 55.1
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.2e-207 727.2 621 60.7
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.2e-175 620.9 621 51.7
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.3e-163 580.1 511 56.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 2.9e-159 567.4 565 52.0
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.4e-150 538.5 473 58.8
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 9.0e-145 519.2 520 51.0
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 1.6e-112 412.1 355 61.4
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 5.0e-103 380.6 390 51.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 4.2e-102 377.5 1469 26.1
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 2.3e-100 371.7 315 59.4
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 3.1e-97 361.3 333 56.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 4.0e-92 344.4 1252 25.2
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 4.6e-72 277.7 266 53.0
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 3.4e-35 155.2 126 60.3
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 5.0e-26 124.8 246 37.0
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 2.1e-24 119.4 102 58.8
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.7e-24 119.0 154 42.9
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 7.4e-22 110.9 78 62.8
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 2.0e-11 76.3 140 32.1
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 3.5e-11 75.5 196 28.6
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 3.8e-10 72.0 165 27.9
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 5.0e-10 71.6 131 38.2
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 1.1e-09 70.5 50 66.0
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.1e-09 70.5 46 69.6
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.9e-09 69.7 189 32.3
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.2e-08 67.0 69 52.2
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.7e-08 65.9 95 36.8
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 4.7e-08 65.1 41 70.7
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 1.8e-07 63.2 53 62.3
Haze_26842 Corylus avellana HOM05D000032 ORTHO05D028824 3.9e-07 62.0 143 27.3
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 5.2e-07 61.6 53 60.4
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 5.2e-07 61.6 181 28.7
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 3.3e-06 58.9 224 24.1


User provided reference genes

Program Settings