Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 0.0e+00 1249.6 625 100.0
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.1e-120 437.2 410 58.3
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 1.6e-107 394.4 442 51.1
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 9.0e-103 378.6 367 55.0
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.5e-102 377.9 375 53.9
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 2.0e-102 377.5 351 57.3
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 2.6e-102 377.1 409 52.1
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 3.8e-101 373.2 411 50.9
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 1.1e-100 371.7 350 55.1
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 1.9e-100 370.9 350 54.6
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 3.2e-100 370.2 374 52.9
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 4.2e-100 369.8 370 53.2
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 4.2e-100 369.8 350 55.4
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 5.5e-100 369.4 370 52.4
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 7.2e-100 369.0 351 55.8
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 1.2e-99 368.2 348 55.5
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.6e-99 367.9 349 55.9
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 1.6e-99 367.9 370 53.8
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 2.1e-99 367.5 379 51.5
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 4.6e-99 366.3 349 55.3
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 6.1e-99 365.9 354 54.2
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 6.1e-99 365.9 349 55.6
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 6.1e-99 365.9 349 55.3
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 6.1e-99 365.9 352 56.8
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 6.1e-99 365.9 353 53.5
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 1.0e-98 365.2 352 57.4
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 1.4e-98 364.8 353 56.4
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 3.9e-98 363.2 373 50.9
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 5.1e-98 362.8 350 55.1
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 6.7e-98 362.5 374 52.9
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 8.8e-98 362.1 399 49.9
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 1.5e-97 361.3 354 52.8
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 1.5e-97 361.3 352 55.4
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 2.5e-97 360.5 357 54.1
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 3.3e-97 360.1 375 52.3
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 3.3e-97 360.1 353 54.7
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 4.3e-97 359.8 355 52.7
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 5.7e-97 359.4 357 54.6
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 7.4e-97 359.0 349 52.7
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 7.4e-97 359.0 375 51.2
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 7.4e-97 359.0 350 55.7
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 7.4e-97 359.0 351 54.7
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 7.4e-97 359.0 350 54.6
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 1.7e-96 357.8 416 47.1
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 1.7e-96 357.8 350 55.1
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 2.8e-96 357.1 407 48.2
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 3.7e-96 356.7 372 51.1
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 4.8e-96 356.3 348 53.4
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 4.8e-96 356.3 349 53.3
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 4.8e-96 356.3 355 52.4
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 4.8e-96 356.3 353 53.5
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 4.8e-96 356.3 460 44.8
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 1.1e-95 355.1 351 54.7
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 1.8e-95 354.4 382 51.0
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 2.4e-95 354.0 353 53.0
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 3.1e-95 353.6 354 52.5
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 3.1e-95 353.6 348 54.0
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 4.1e-95 353.2 370 51.6
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 4.1e-95 353.2 349 53.0
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 4.1e-95 353.2 351 53.8
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 6.9e-95 352.4 379 51.7
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 9.1e-95 352.1 356 52.2
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 2.0e-94 350.9 356 54.5
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 2.6e-94 350.5 386 47.7
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 2.6e-94 350.5 386 48.7
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 2.6e-94 350.5 351 51.9
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 4.5e-94 349.7 356 52.0
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 5.9e-94 349.4 375 50.7
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 7.7e-94 349.0 356 54.2
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 7.7e-94 349.0 353 52.1
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 7.7e-94 349.0 354 53.4
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 1.0e-93 348.6 354 52.5
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 1.7e-93 347.8 386 48.2
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 1.7e-93 347.8 347 51.6
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 2.2e-93 347.4 394 49.7
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 2.2e-93 347.4 370 49.7
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 3.8e-93 346.7 315 57.5
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 5.0e-93 346.3 386 48.2
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 6.5e-93 345.9 386 48.2
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 6.5e-93 345.9 351 53.0
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 8.5e-93 345.5 355 51.3
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 1.1e-92 345.1 389 47.8
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 1.9e-92 344.4 389 46.5
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 2.5e-92 344.0 386 48.2
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 7.2e-92 342.4 342 54.4
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 7.2e-92 342.4 355 50.7
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 9.4e-92 342.0 370 48.6
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 2.1e-91 340.9 357 53.2
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 3.6e-91 340.1 389 47.3
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 3.6e-91 340.1 389 47.3
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 4.7e-91 339.7 350 50.6
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 4.7e-91 339.7 350 50.6
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 6.1e-91 339.3 380 47.1
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 6.1e-91 339.3 383 47.8
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 1.0e-90 338.6 352 50.3
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 1.8e-90 337.8 371 49.9
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.1e-90 336.3 336 53.9
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 6.7e-90 335.9 349 51.9
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 8.8e-90 335.5 355 51.8
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 5.7e-89 332.8 367 50.7
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 1.8e-87 327.8 371 49.9
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 4.5e-86 323.2 422 44.1
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 1.3e-85 321.6 379 47.8
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 1.4e-79 301.6 365 44.9
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 4.4e-73 280.0 251 56.6
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.7e-72 278.1 351 46.2
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 1.6e-70 271.6 252 56.7
SEGI_34208 Sequoiadendron giganteum HOM05D001090 ORTHO05D002687 1.7e-64 251.5 246 56.1
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 2.2e-64 251.1 304 46.4
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.3e-60 237.3 287 45.3
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 4.3e-52 210.3 310 42.3
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 2.3e-45 188.0 209 47.4
SEGI_06305 Sequoiadendron giganteum HOM05D003193 ORTHO05D002687 1.1e-39 169.1 196 48.0
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 1.6e-38 165.2 420 27.9
SEGI_18754 Sequoiadendron giganteum HOM05D006301 ORTHO05D000646 1.4e-31 142.1 93 71.0
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 7.1e-31 139.8 142 51.4
SEGI_04478 Sequoiadendron giganteum HOM05D006301 ORTHO05D007027 2.3e-29 134.8 94 64.9
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 1.2e-27 129.0 179 44.7
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 4.7e-27 127.1 146 46.6
SEGI_09395 Sequoiadendron giganteum HOM05D006301 ORTHO05D007910 1.3e-24 119.0 67 83.6
SEGI_01127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.8e-24 117.5 85 60.0
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 9.3e-23 112.8 115 47.8
SEGI_25764 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.2e-22 112.5 249 29.3
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 3.4e-17 94.4 97 51.5
SEGI_30748 Sequoiadendron giganteum HOM05D003193 ORTHO05D017116 1.3e-16 92.4 114 42.1
SEGI_00817 Sequoiadendron giganteum HOM05D000124 ORTHO05D007027 3.8e-16 90.9 64 65.6
SEGI_35559 Sequoiadendron giganteum HOM05D000725 ORTHO05D002005 3.2e-15 87.8 237 29.1
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 9.3e-15 86.3 173 38.7
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 1.0e-13 82.8 65 60.0
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 1.0e-13 82.8 65 60.0
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.3e-13 82.4 78 55.1
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.5e-12 78.2 86 47.7
SEGI_07325 Sequoiadendron giganteum HOM05D003193 ORTHO05D017116 3.3e-12 77.8 90 42.2
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 7.3e-12 76.6 378 23.3
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 3.6e-11 74.3 78 44.9
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.4e-10 72.4 69 50.7
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 4.0e-10 70.9 69 49.3
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.5e-09 68.9 59 55.9
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.7e-08 65.5 42 69.0
SEGI_12643 Sequoiadendron giganteum HOM05D018676 ORTHO05D017321 2.9e-08 64.7 117 34.2
SEGI_01020 Sequoiadendron giganteum HOM05D001439 ORTHO05D017116 1.4e-07 62.4 242 24.4
SEGI_16908 Sequoiadendron giganteum HOM05D003193 ORTHO05D017116 1.4e-07 62.4 87 39.1
SEGI_30437 Sequoiadendron giganteum HOM05D000238 ORTHO05D007027 1.9e-07 62.0 78 35.9
SEGI_34435 Sequoiadendron giganteum HOM05D018636 ORTHO05D007027 1.2e-06 59.3 75 36.0
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 4.6e-06 57.4 53 49.1


User provided reference genes

Program Settings