Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31566 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 9.8e-206 719.9 372 100.0
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 3.2e-156 555.4 373 77.5
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 7.3e-100 368.2 374 51.9
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 3.9e-93 345.9 373 51.2
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 3.9e-93 345.9 373 51.5
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 4.0e-90 335.9 377 48.5
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 8.9e-90 334.7 373 48.3
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 1.2e-89 334.3 374 49.7
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 1.5e-89 334.0 375 49.3
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 2.6e-89 333.2 374 48.7
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 4.4e-89 332.4 376 47.3
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 1.3e-88 330.9 380 49.5
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 2.2e-88 330.1 374 47.9
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 2.9e-88 329.7 375 50.1
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 3.2e-87 326.2 373 48.8
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 4.1e-87 325.9 373 47.2
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 5.4e-87 325.5 378 50.0
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 2.1e-86 323.6 375 49.3
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 2.7e-86 323.2 379 48.5
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 3.5e-86 322.8 376 46.5
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 4.6e-86 322.4 375 49.9
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 7.8e-86 321.6 380 47.9
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 1.0e-85 321.2 377 46.4
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 1.0e-85 321.2 374 48.7
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 1.0e-85 321.2 376 47.9
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 1.3e-85 320.9 375 48.5
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 1.3e-85 320.9 377 49.1
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.3e-85 320.9 383 48.0
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 2.3e-85 320.1 373 47.2
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 2.3e-85 320.1 379 47.0
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 3.0e-85 319.7 376 48.9
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 3.0e-85 319.7 374 46.8
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 3.0e-85 319.7 374 46.8
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 3.0e-85 319.7 375 48.0
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 3.0e-85 319.7 374 47.6
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 3.9e-85 319.3 376 48.1
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 3.9e-85 319.3 376 48.1
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 3.9e-85 319.3 373 47.7
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 3.9e-85 319.3 375 47.7
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 5.1e-85 318.9 374 46.5
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 5.1e-85 318.9 379 47.5
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 5.1e-85 318.9 375 47.7
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 5.1e-85 318.9 379 47.0
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 6.6e-85 318.5 376 47.3
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 6.6e-85 318.5 376 47.6
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 1.1e-84 317.8 376 47.6
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 1.5e-84 317.4 376 47.6
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.5e-84 317.4 374 47.1
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.5e-84 317.4 373 47.2
CSS0048264 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 1.9e-84 317.0 374 46.5
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 1.9e-84 317.0 375 47.7
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 1.9e-84 317.0 375 48.8
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 1.9e-84 317.0 376 47.1
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 2.5e-84 316.6 378 47.9
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 4.3e-84 315.8 379 46.2
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 4.3e-84 315.8 382 47.4
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 5.6e-84 315.5 374 48.4
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 5.6e-84 315.5 374 47.1
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 7.3e-84 315.1 373 48.0
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 7.3e-84 315.1 376 46.8
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 7.3e-84 315.1 378 47.4
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 7.3e-84 315.1 375 47.2
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 1.6e-83 313.9 375 48.5
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 1.6e-83 313.9 375 48.5
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 1.6e-83 313.9 375 47.7
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 2.1e-83 313.5 375 48.3
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 2.1e-83 313.5 376 46.0
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 2.1e-83 313.5 376 47.3
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 2.1e-83 313.5 375 47.7
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 2.1e-83 313.5 384 48.7
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 2.8e-83 313.2 378 47.4
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 2.8e-83 313.2 378 47.9
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 3.6e-83 312.8 375 46.1
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 4.7e-83 312.4 376 47.1
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 4.7e-83 312.4 374 48.4
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 6.2e-83 312.0 378 47.6
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 6.2e-83 312.0 383 46.2
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 8.1e-83 311.6 375 48.3
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 8.1e-83 311.6 374 48.9
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 8.1e-83 311.6 379 47.2
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 1.4e-82 310.8 376 46.8
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 1.4e-82 310.8 376 46.8
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 1.8e-82 310.5 379 47.2
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 2.3e-82 310.1 375 47.5
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 2.3e-82 310.1 379 47.5
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 3.1e-82 309.7 374 48.7
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 4.0e-82 309.3 376 47.1
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 4.0e-82 309.3 377 48.3
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 5.2e-82 308.9 374 46.3
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 6.8e-82 308.5 374 46.5
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 6.8e-82 308.5 378 46.6
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 6.8e-82 308.5 376 46.5
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 6.8e-82 308.5 379 47.2
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 8.9e-82 308.1 377 46.2
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 8.9e-82 308.1 377 46.2
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.2e-81 307.8 374 46.8
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 2.0e-81 307.0 374 45.7
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 2.6e-81 306.6 400 45.0
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 3.4e-81 306.2 377 46.2
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 3.4e-81 306.2 376 46.8
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 4.4e-81 305.8 376 46.8
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 4.4e-81 305.8 376 45.5
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 7.6e-81 305.1 382 46.1
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 9.9e-81 304.7 389 45.8
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 1.3e-80 304.3 376 44.9
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 1.3e-80 304.3 374 46.3
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 1.7e-80 303.9 375 45.9
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 2.2e-80 303.5 375 46.4
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 2.2e-80 303.5 375 44.0
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 2.9e-80 303.1 376 47.1
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 2.9e-80 303.1 379 46.7
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 3.8e-80 302.8 374 45.7
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 4.9e-80 302.4 383 46.0
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 6.4e-80 302.0 376 46.0
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 6.4e-80 302.0 378 45.0
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 8.4e-80 301.6 377 46.4
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 8.4e-80 301.6 377 46.4
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 8.4e-80 301.6 376 45.2
TAR626G0663 Trochodendron aralioides HOM05D003148 ORTHO05D003894 8.4e-80 301.6 292 53.4
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 1.1e-79 301.2 376 45.7
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 1.1e-79 301.2 375 47.2
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 3.2e-79 299.7 375 47.2
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 5.4e-79 298.9 375 46.7
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 1.6e-78 297.4 373 44.5
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 1.6e-78 297.4 377 46.7
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 6.0e-78 295.4 374 46.3
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.7e-77 293.9 383 44.9
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 2.3e-77 293.5 405 44.7
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 3.9e-77 292.7 378 44.7
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 8.6e-77 291.6 375 45.9
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 1.1e-76 291.2 378 46.0
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 1.5e-76 290.8 390 43.8
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 2.8e-75 286.6 376 45.5
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 6.2e-75 285.4 375 46.1
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 3.1e-74 283.1 377 43.8
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 7.6e-73 278.5 384 44.5
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 1.7e-72 277.3 376 44.1
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 8.4e-72 275.0 382 42.4
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 1.0e-69 268.1 374 43.6
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 1.7e-69 267.3 402 41.8
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 1.9e-68 263.8 310 48.7
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 7.3e-68 261.9 305 47.9
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 9.6e-68 261.5 295 46.8
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 1.3e-67 261.2 370 41.6
CBR_g50948 Chara braunii HOM05D003148 ORTHO05D003894 1.5e-65 254.2 451 37.7
Lj6A79G4 Lonicera japonica HOM05D003148 ORTHO05D003894 4.9e-64 249.2 369 39.6
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 1.1e-63 248.1 373 41.8
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 1.5e-60 237.7 389 40.9
SHI31845 Sapria himalayana HOM05D003148 ORTHO05D003894 3.7e-59 233.0 375 38.4
SEGI_08935 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 4.0e-58 229.6 117 100.0
Os08g0175600 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.3e-56 224.6 210 53.8
CSS0002581 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 4.9e-56 222.6 214 52.8
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 2.7e-54 216.9 375 37.3
TPR.G16585 Trifolium pratense HOM05D003148 ORTHO05D003894 3.0e-53 213.4 215 52.6
PSO478G0587 Papaver somniferum HOM05D003148 ORTHO05D003894 7.4e-52 208.8 238 46.2
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 3.2e-47 193.4 264 40.5
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 3.5e-46 189.9 241 44.4
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 7.9e-46 188.7 391 35.0
TAR624G0017 Trochodendron aralioides HOM05D003148 ORTHO05D026836 5.7e-36 156.0 151 53.6
Lsat_1_v5_gn_6_61201 Lactuca sativa HOM05D003148 ORTHO05D026836 1.5e-33 147.9 124 55.6
Lj6A83T13 Lonicera japonica HOM05D003148 ORTHO05D003894 2.9e-32 143.7 226 37.2
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 6.1e-30 136.0 421 29.7
Duzib170G0998 Durio zibethinus HOM05D003148 ORTHO05D003894 1.0e-24 118.6 179 38.5
Duzib170G0320 Durio zibethinus HOM05D003148 ORTHO05D003894 6.5e-24 115.9 127 48.8
TPR.G95 Trifolium pratense HOM05D003148 ORTHO05D030578 3.6e-22 110.2 171 42.1
Nn1g03580 Nelumbo nucifera HOM05D003148 ORTHO05D003894 4.7e-22 109.8 163 42.3
HanXRQChr05g0159101 Helianthus annuus HOM05D003148 ORTHO05D003894 1.1e-20 105.1 162 43.2
PRCOL_00004766 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 2.4e-18 97.4 250 29.2
Eucgr.F00930 Eucalyptus grandis HOM05D003148 ORTHO05D003894 2.0e-17 94.4 99 46.5
Lju760A7G20 Lonicera japonica HOM05D003148 ORTHO05D003894 1.0e-16 92.0 219 30.6
HPP92_009351 Vanilla planifolia HOM05D003148 ORTHO05D003894 2.1e-14 84.3 90 53.3
Cre08.g363837 Chlamydomonas reinhardtii HOM05D003148 ORTHO05D003894 4.8e-11 73.2 225 25.8
COL.COLO4_09803 Corchorus olitorius HOM05D021535 ORTHO05D000431 3.5e-09 67.0 239 24.3
Lj6C83G1 Lonicera japonica HOM05D003148 ORTHO05D003894 1.7e-08 64.7 123 34.1
AL3G41470 Arabidopsis lyrata HOM05D003148 ORTHO05D026836 3.8e-08 63.5 73 47.9
TAR626G0592 Trochodendron aralioides HOM05D003148 ORTHO05D003894 3.8e-08 63.5 53 56.6
HanXRQChr05g0159391 Helianthus annuus HOM05D003148 ORTHO05D003894 7.2e-07 59.3 90 45.6
Lju760A7G19 Lonicera japonica HOM05D003148 ORTHO05D026836 3.6e-06 57.0 90 33.3


User provided reference genes

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