Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10674 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 2.7e-134 481.9 226 100.0
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 2.1e-78 296.2 141 93.6
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 4.8e-78 295.0 141 92.9
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 3.1e-77 292.4 141 92.2
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 9.0e-77 290.8 141 92.2
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 9.0e-77 290.8 141 91.5
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 1.2e-76 290.4 141 91.5
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 1.2e-76 290.4 141 91.5
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 1.5e-76 290.0 141 92.2
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 2.0e-76 289.7 141 90.8
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 4.4e-76 288.5 141 91.5
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 2.2e-75 286.2 139 90.6
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 4.9e-75 285.0 141 89.4
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 4.9e-75 285.0 141 89.4
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 4.9e-75 285.0 150 87.3
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 4.9e-75 285.0 150 87.3
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 1.1e-74 283.9 141 87.9
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 1.4e-74 283.5 141 87.9
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 1.9e-74 283.1 141 90.1
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 3.2e-74 282.3 141 89.4
DCAR_026768 Daucus carota HOM05D003934 ORTHO05D005108 5.4e-74 281.6 141 89.4
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 5.4e-74 281.6 141 88.7
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.4e-74 281.6 141 88.7
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.4e-74 281.6 141 88.7
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.4e-74 281.6 141 88.7
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.4e-74 281.6 141 88.7
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 5.4e-74 281.6 141 88.7
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 1.6e-73 280.0 150 86.0
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 1.6e-73 280.0 150 86.0
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 1.6e-73 280.0 150 86.0
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 3.5e-73 278.9 147 85.0
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 6.0e-73 278.1 150 84.7
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 6.0e-73 278.1 129 95.3
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 7.9e-73 277.7 147 84.4
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 7.9e-73 277.7 141 86.5
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 1.0e-72 277.3 130 94.6
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 1.0e-72 277.3 128 96.9
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 1.3e-72 276.9 134 91.0
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 1.3e-72 276.9 128 96.1
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 3.0e-72 275.8 149 84.6
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 3.9e-72 275.4 128 94.5
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 5.1e-72 275.0 130 93.8
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 5.1e-72 275.0 133 91.7
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 5.1e-72 275.0 128 95.3
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 5.1e-72 275.0 129 94.6
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 6.6e-72 274.6 150 83.3
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 6.6e-72 274.6 150 83.3
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 6.6e-72 274.6 150 84.0
DCAR_009017 Daucus carota HOM05D003934 ORTHO05D005108 8.7e-72 274.2 142 88.0
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 1.5e-71 273.5 129 93.8
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 1.9e-71 273.1 129 93.8
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.9e-71 273.1 141 85.8
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 2.5e-71 272.7 131 92.4
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 2.5e-71 272.7 150 82.7
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 3.3e-71 272.3 128 93.0
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 4.3e-71 271.9 150 81.3
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 4.3e-71 271.9 150 83.3
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 9.6e-71 270.8 128 93.8
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 1.6e-70 270.0 128 92.2
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 1.6e-70 270.0 129 92.2
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 1.6e-70 270.0 129 92.2
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 1.6e-70 270.0 150 82.0
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 1.6e-70 270.0 129 92.2
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 2.1e-70 269.6 129 92.2
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 2.1e-70 269.6 129 92.2
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 2.1e-70 269.6 130 91.5
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 2.1e-70 269.6 130 91.5
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 2.1e-70 269.6 132 89.4
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 2.1e-70 269.6 129 92.2
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 2.1e-70 269.6 130 93.1
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 2.8e-70 269.2 131 90.8
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 3.6e-70 268.9 167 73.7
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 3.6e-70 268.9 150 82.0
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 3.6e-70 268.9 150 82.0
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 3.6e-70 268.9 150 82.0
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 3.6e-70 268.9 131 90.1
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 3.6e-70 268.9 150 82.0
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 3.6e-70 268.9 150 82.0
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 3.6e-70 268.9 128 93.0
ATR0602G148 Amborella trichopoda HOM05D003934 ORTHO05D005108 4.8e-70 268.5 128 91.4
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 4.8e-70 268.5 130 90.8
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 4.8e-70 268.5 130 90.8
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 6.2e-70 268.1 130 90.8
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 8.1e-70 267.7 129 90.7
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 8.1e-70 267.7 129 90.7
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 8.1e-70 267.7 129 90.7
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 8.1e-70 267.7 129 90.7
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 8.1e-70 267.7 129 90.7
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 8.1e-70 267.7 128 92.2
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 1.4e-69 266.9 128 91.4
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 2.4e-69 266.2 130 90.0
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 3.1e-69 265.8 126 92.1
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 3.1e-69 265.8 128 91.4
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 4.0e-69 265.4 150 80.0
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 4.0e-69 265.4 129 89.1
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 4.0e-69 265.4 150 80.0
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 4.0e-69 265.4 130 90.0
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 5.3e-69 265.0 141 85.1
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 1.2e-68 263.8 151 80.1
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 1.2e-68 263.8 128 89.1
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 3.4e-68 262.3 130 89.2
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 8.4e-67 257.7 128 89.1
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 1.1e-66 257.3 143 81.1
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 7.1e-66 254.6 141 82.3
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 3.9e-64 248.8 136 77.9
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 3.3e-63 245.7 125 87.2
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 3.3e-63 245.7 125 87.2
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 3.3e-63 245.7 125 87.2
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 3.3e-63 245.7 125 87.2
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 1.4e-61 240.4 152 75.0
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.8e-61 240.0 152 75.0
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.8e-61 240.0 152 75.0
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 4.0e-61 238.8 152 74.3
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 7.6e-60 234.6 152 73.7
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 2.2e-59 233.0 142 76.8
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 2.2e-59 233.0 142 76.8
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 2.9e-59 232.6 113 88.5
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 6.5e-59 231.5 143 76.2
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 1.4e-58 230.3 142 76.1
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 2.5e-58 229.6 129 82.9
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 2.5e-58 229.6 110 90.0
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 9.3e-58 227.6 143 74.8
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 2.3e-56 223.0 140 71.4
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 9.6e-55 217.6 108 86.1
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 1.1e-50 204.1 151 63.6
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.4e-50 203.8 129 69.8
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.2e-50 202.6 135 70.4
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 1.2e-49 200.7 126 70.6
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.7e-47 191.0 93 87.1
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.2e-46 189.9 140 66.4
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 4.5e-44 182.2 127 59.8
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 6.5e-43 178.3 100 81.0
Aqoxy2G03740 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 2.5e-42 176.4 124 63.7
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 1.3e-38 164.1 148 52.7
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 4.8e-38 162.2 140 53.6
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 9.1e-37 157.9 78 84.6
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 5.0e-35 152.1 104 68.3
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 1.4e-32 144.1 150 50.7
AUR62031016 Chenopodium quinoa HOM05D003934 ORTHO05D005108 4.0e-24 115.9 70 71.4
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 4.0e-24 115.9 142 48.6
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 5.2e-24 115.5 142 48.6
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.2e-24 115.5 142 48.6
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.5e-23 114.0 142 47.9
A07p21690 Brassica napus HOM05D003934 ORTHO05D019879 1.7e-22 110.5 85 61.2
BolC6t37330H Brassica oleracea HOM05D003934 ORTHO05D019879 8.2e-22 108.2 85 60.0
BraA07t29851Z Brassica rapa HOM05D003934 ORTHO05D019879 8.2e-22 108.2 85 60.0
BcaC08g44628 Brassica carinata HOM05D003934 ORTHO05D019879 1.1e-21 107.8 85 60.0
C06p21480 Brassica napus HOM05D003934 ORTHO05D019879 1.1e-21 107.8 85 60.0
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.4e-21 106.7 56 80.4
Aqoxy1G01000 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 5.9e-20 102.1 72 62.5
BcaB02g07780 Brassica carinata HOM05D003934 ORTHO05D019879 1.0e-16 91.3 85 55.3
Hma1.2p1_1973F.1_g309600 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 1.8e-13 80.5 49 67.3
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 2.4e-13 80.1 59 66.1
FAN07G2332 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.1e-13 79.7 119 44.5
HanXRQChr09g0252591 Helianthus annuus HOM05D003934 ORTHO05D019879 4.1e-13 79.3 50 74.0
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 6.8e-08 62.0 49 65.3


User provided reference genes

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